View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_2 (Length: 458)
Name: NF15371_low_2
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 32789620 - 32790047
Alignment:
| Q |
18 |
gtcccatcattcaagggttagggaatcttgcaagaagaaccaatttaacaaactctgaaacacaaaatgcgggacaatctatgtctaaaacattgagcac |
117 |
Q |
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| T |
32789620 |
gtcccatcattcaagggttagggaaccttgcaagaagaaccaatttaacaaactctgaaacacaaaatgcgggacaatctatgtctaaaacattgagcac |
32789719 |
T |
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| Q |
118 |
cacgtctgttgcgaacaaaggacaatggatggagaatcaatagaaagaaatgaaaagnnnnnnnn--gttttatttaaagaatgaaaataggag---act |
212 |
Q |
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| T |
32789720 |
caggtctgttacgaacaaaggacaatggatggagaatcaatagaaagaaatgaaaagaaaaaaaaaagttttatttaaagaatgaaaataggaggagact |
32789819 |
T |
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| Q |
213 |
ctcctctaatggtatccctttcacaaagggctgctactttatccattcaaaatacaacaaacaaatgtaccagatccctcg-tcatccttatttatccta |
311 |
Q |
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| T |
32789820 |
ctcctctaatggtatccctttcacaaagggctgctactttatccattcaaaatacaacaaacaaatgtaccagatccctcgctcatccttatttatccta |
32789919 |
T |
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| Q |
312 |
tttatattttatacacgataccctctcaaactacttaacttctcttactagcttcccttctaagttctaactacttaacttctctcattaactaaataac |
411 |
Q |
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| T |
32789920 |
tttatgttttatacacgatatcctctcaaactactaaacttctcttactagcttcccttctaagttctaactacttaacttctctcattaactaaataac |
32790019 |
T |
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| Q |
412 |
tataatggtagatcttaacaattcccac |
439 |
Q |
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| T |
32790020 |
tataatggtagatcttaacaattcccac |
32790047 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Original strand, 48282975 - 48283032
Alignment:
| Q |
376 |
ttctaactacttaacttctctcattaactaaataactataatggtagatcttaacaat |
433 |
Q |
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| T |
48282975 |
ttctaactagttaacttatcttcttaactaaataactataaggatagatcctaacaat |
48283032 |
T |
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