View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_5 (Length: 437)
Name: NF15371_low_5
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 28642541 - 28642138
Alignment:
| Q |
19 |
aaaccctcttccagatttcttaaggacaactccttcctgacgatgtttttgagtttgagaatcatcggtatctgatgagttgttcttgctttgattttcc |
118 |
Q |
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| T |
28642541 |
aaaccctcttccagatttcttaaggacaactccttcctgacgatgtttttgagtttgagaatcatcggtatctgatgagttgttcttgctttgattttcc |
28642442 |
T |
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| Q |
119 |
atatcacagactgattcggtattagaaccagtgcaagaactttcctcctctcttgttattaccttcaaacaaggtctaagaggcacaggattaagaattt |
218 |
Q |
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| T |
28642441 |
atatcacagactgattcggtattagaaccagtgcaagaactttcctcctctcttgttattaccttcaaacaaggtctaagaggcacaggattaagaattt |
28642342 |
T |
|
| Q |
219 |
gatgattgcatggcatgaggtggaaagctggaaggccttggtacaaactccataatggtaaagttgcgcactcgctgacatatggactctccttcagctg |
318 |
Q |
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| T |
28642341 |
gatgattgcatggcatgaggtggaaagctggaaggccttggtacaaactccataacggtaaagttgcgcactcgctgacatatggactctccttcggccg |
28642242 |
T |
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| Q |
319 |
ttccatgctgctcacttgagctccatcaggtgtacagatgcctagtgataattgtgtatcaagtggctctgatacctctttttggccaaccttctcaaca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28642241 |
ttccatgctgctcacttgagctccatcaggtgtacagatgcctagtgataattgtatatcaagtggctctgatacctctttttggccaaccttctcaaca |
28642142 |
T |
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| Q |
419 |
tcct |
422 |
Q |
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|||| |
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| T |
28642141 |
tcct |
28642138 |
T |
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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 19205835 - 19205773
Alignment:
| Q |
99 |
tgttcttgctttgattttccatatcacagactgattcggtattagaaccagtgcaagaacttt |
161 |
Q |
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| T |
19205835 |
tgttcttgctttgattttccatatcacaaactgattcagtattagaaccaatgcaagaacttt |
19205773 |
T |
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