View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_6 (Length: 414)
Name: NF15371_low_6
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_6 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 213 - 398
Target Start/End: Complemental strand, 6075197 - 6075011
Alignment:
| Q |
213 |
gataccgctgaaaccattcgatatataaaatttgttagacaagttaatgatattaaggtaattttaattatttgtacataaattttttactactaacaag |
312 |
Q |
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| T |
6075197 |
gataccgctgaaaccattcgatatataaaatttgttagagaaattaatgatattaaggtaattttatttatttgttcataaa-attttactactaacaag |
6075099 |
T |
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| Q |
313 |
tgtgaccatatcaaagtggtactaacaaatga--gtgtgtacgttggctagcttagattgaaacttcctttgatgactccatgaagat |
398 |
Q |
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| T |
6075098 |
tgtgaccatatcaaagtggtactaacaaatgagtgtgtgtaggttggctagcttagattgaaacttcctttgatgactccatgaagat |
6075011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6075470 - 6075378
Alignment:
| Q |
1 |
tagtacgggaagatccacgtagtttaggtatatttttgtaaaaatgatactaaagatgaagcca-tttattatgtagaaaatagatctatgtt |
92 |
Q |
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| T |
6075470 |
tagtacgggaagatccacgtagtttaggtatatttttgtaaaaatggtactaaagatgaagccatttttttttgtagaaaatagatctatgtt |
6075378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 6075320 - 6075257
Alignment:
| Q |
91 |
tttgtttaaaagaca-ttatgatgagttggtgaagttaatgattataagactggaatcgaaggc |
153 |
Q |
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| T |
6075320 |
tttgtttaaaagacagttattatgagttggtgaagttaatgattataagattggaatcgaaggc |
6075257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 27394821 - 27394885
Alignment:
| Q |
213 |
gataccgctgaaaccattcgatatataaaatttgttagacaagttaatgatattaaggtaatttta |
278 |
Q |
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| T |
27394821 |
gataccactgaaac-attcgatatataaaatttgttagacaaattaatgatattaaggttatttta |
27394885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27394560 - 27394650
Alignment:
| Q |
1 |
tagtacgggaagatccacgtagtttaggtatatttttgtaaaaatgatactaaagatgaagccatttattatgtagaaaatagatctatgtt |
92 |
Q |
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| T |
27394560 |
tagtacaggaagatctatgtagtttaggtatatttttgtagaaatggtattgaagatgaaaccattt-ttttgtagaaaatagatatatgtt |
27394650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 27394694 - 27394759
Alignment:
| Q |
89 |
tgtttgtttaaaagaca-ttatgatgagttggtgaagttaatgattataagactggaatcgaaggc |
153 |
Q |
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| T |
27394694 |
tgtttatttaatagacagttatgatgagtttgtgaagttagtgattataaggttggaatcgaaggc |
27394759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 22501400 - 22501353
Alignment:
| Q |
106 |
ttatgatgagttggtgaagttaatgattataagactggaatcgaaggc |
153 |
Q |
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| T |
22501400 |
ttatgatgagttggtgaagttaatgattataaggttggaatcaaaggc |
22501353 |
T |
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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 49871 - 49912
Alignment:
| Q |
226 |
ccattcgatatataaaatttgttagacaagttaatgatatta |
267 |
Q |
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| T |
49871 |
ccatttgatatatgaattttgttagacaagttaatgatatta |
49912 |
T |
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