View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_9 (Length: 326)
Name: NF15371_low_9
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 35094113 - 35094413
Alignment:
| Q |
8 |
cgaagaatattaaacttatattctatgatgtttattagttgaagtgaaaatgaaaataccgtgaaggcgaacggccaagcttccattgggaacaaagtcg |
107 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094113 |
cgaaaaatattaaacttatattctctgatgtttattagttgaagtgaaaatgaaaataccgtgaaggcgaacggccaagcttccattgggaacaaagtcg |
35094212 |
T |
|
| Q |
108 |
gtgatgaaaagtttctcgtctcttttgtagtagtaagctacgagaggaaggagattcggatgattcaaccttcccagtcttctcatgtgctcttgaaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35094213 |
gtgatgaaaagtttctcgtctcttttgtagtagtaagctacgagaggaaggagattcggatgattcaaccttcctagtcttctcatgtgctcttgaaact |
35094312 |
T |
|
| Q |
208 |
ctggcctattaacattgttcatttgtttgtatcttttgacgacaacagtagggccagtcaacaaagcagccttataggatgaactgtgacaaccacttcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094313 |
ctggcctattaacattgttcatttgtttgtatcttttgacgacaacagtagggccagtcaacaaagcagccttataggatgaactgtgacaaccacttcc |
35094412 |
T |
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| Q |
308 |
t |
308 |
Q |
| |
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| |
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| T |
35094413 |
t |
35094413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 32863466 - 32863427
Alignment:
| Q |
24 |
tatattctatgatgtttattagttgaagtgaaaatgaaaa |
63 |
Q |
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| T |
32863466 |
tatattctatcatgtttattagttgaagtaaaaatgaaaa |
32863427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 14390526 - 14390477
Alignment:
| Q |
13 |
aatattaaacttatattctatgatgtttattagttgaagtgaaaatgaaa |
62 |
Q |
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| T |
14390526 |
aatattgaatttatattgtatcatgttttttagttgaagtgaaaatgaaa |
14390477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 47364829 - 47364879
Alignment:
| Q |
13 |
aatattaaacttatattctatgatgtttattagttgaagtgaaaatgaaaa |
63 |
Q |
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||||||||| |||| |||| | ||||||||||||||||||||||||||||| |
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| T |
47364829 |
aatattaaatttattttcttttatgtttattagttgaagtgaaaatgaaaa |
47364879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 13806144 - 13806182
Alignment:
| Q |
25 |
atattctatgatgtttattagttgaagtgaaaatgaaaa |
63 |
Q |
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||||||| | ||||||||||||||||||||||||||||| |
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| T |
13806144 |
atattctcttatgtttattagttgaagtgaaaatgaaaa |
13806182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 10195391 - 10195349
Alignment:
| Q |
24 |
tatattctatgatgtttattagttgaagtgaaaatgaaaatac |
66 |
Q |
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| T |
10195391 |
tatattttatcatgtctattagttgaagtgaaaatgaaaatac |
10195349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 43537619 - 43537569
Alignment:
| Q |
13 |
aatattaaacttatattctatgatgtttattagttgaagtgaaaatgaaaa |
63 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
43537619 |
aatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaa |
43537569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 42509430 - 42509285
Alignment:
| Q |
64 |
taccgtgaaggcgaacggccaagcttccattgggaacaaagtcggtgatgaaaagtttctcgtctcttttgtagtagtaagctacgagaggaaggagatt |
163 |
Q |
| |
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|||| ||||||||||| || | ||| || || ||||||||||||| | || || ||||| ||| || | || |||||||| || ||||||| | ||| |
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| T |
42509430 |
taccatgaaggcgaacagctaggctaccgttctgaacaaagtcggtaaccaagagcttctcttcttttctataatagtaagcaacaagaggaatcaaatt |
42509331 |
T |
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| Q |
164 |
cggatgattcaaccttcccagtcttctcatgtgctcttgaaactct |
209 |
Q |
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||||| ||||||||||| | |||||||| ||||||||||||||| |
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| T |
42509330 |
aggatggttcaaccttccaatccttctcatatgctcttgaaactct |
42509285 |
T |
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