View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15372_high_13 (Length: 246)
Name: NF15372_high_13
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 32647263 - 32647471
Alignment:
| Q |
17 |
caattatacctatgaaagttgagtttaggtgagcatgcaatccttgttgtgtttgtgactaaaactatgtgtcaatcaatattgcgtgtttgtataagtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32647263 |
caattatacctatgaaagttgagtttaggtgagcatgcaatccttgttgtgtttgtgactaaaactatgtgtcaatcaatattgcgtgtttgtataagtt |
32647362 |
T |
|
| Q |
117 |
tattacgaagcactcactcactaaatacagtgttacttgtttgttaacataaaaaattagtttagactgaactttagaaaaagaaaagaacaaataaata |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32647363 |
tattacgaagcactc-----------acagtgttacttgtttgttaacataaaaaattagtttagactgaactttagaaaaagaaaagaacaaataaata |
32647451 |
T |
|
| Q |
217 |
ctataacaataagagaataa |
236 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32647452 |
ctataacaataagagaataa |
32647471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University