View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_high_3 (Length: 871)
Name: NF15372_high_3
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 490
Target Start/End: Original strand, 4838737 - 4839212
Alignment:
| Q |
17 |
tgaactaccattataaataaaggtctagctatcc-attttttcatgcaaagaaaattctactcctcgatattagaatggtctgcattgttttnnnnnnnn |
115 |
Q |
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| T |
4838737 |
tgaacttccattataaataaaggtatagctatcccattcattcatgcaaagaaaattttactc---ggtattaaaatggtctgcatcgttttaaaaaaga |
4838833 |
T |
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| Q |
116 |
ngagttaattcattttttaaagtgatgaagacattttaatattgtgtagttattttctaaatatagaaagctttgagattttaaagaagtctaaactaac |
215 |
Q |
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| T |
4838834 |
tgagttagttcattttttaaagtgatgaagacattttaatattgtgtagttattttctaaatatagaaagctttgagattttaaagaagtctaaactaac |
4838933 |
T |
|
| Q |
216 |
ttttattacnnnnnnnnnnngttatagnnnnnnnctaaccattttaatattatttttaagttaatttcacttgtatgcggttttctcattaataagctag |
315 |
Q |
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| T |
4838934 |
tgttattacgttttttttttttgttgagaaaaaactaaccattttaatattatttttaagttaatttcacttgtatgcggttttctcattaataagctag |
4839033 |
T |
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| Q |
316 |
catcttggaaaggtagacttctaaataaaccaggttgtgtta--ctcgttaattctgtttcgaattcgatccctgattacaagatgcaaatccattagct |
413 |
Q |
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| T |
4839034 |
catcttggaaatgtagacttttaaataaaccaagtcgtgttattctcgttaattctgttttgacttcgattcctgcttacaagatgcaaatccattagct |
4839133 |
T |
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| Q |
414 |
tgctcattatata--tgtgatcgatcatctaaacaaaacaattcatagttttatatgaaaaggatccccaaacaaaggt |
490 |
Q |
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| T |
4839134 |
tgctcattatatatgtgtgatcgatcatctaaacaaaacggttcatagttttatatgaaaatgatccacaaacaaaggt |
4839212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 578 - 776
Target Start/End: Original strand, 4841297 - 4841499
Alignment:
| Q |
578 |
ggcaccaccggtgtatggtacgaaccttggttgctaaaggatcctttatgcaatcttgtaccgtttgttcatattcaagatattgatcttcaaatcaaat |
677 |
Q |
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| T |
4841297 |
ggcaccaccggtgtatggtacgaaccttggttgctaaaggatcctttataccatcttgtaccatttgtacatattcaagatattgatcttcaaatcaaat |
4841396 |
T |
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| Q |
678 |
atgttatttgtaacgc----gggaggtaatctgcaaaatgtttacaccatgctaccgctgatgttcaaacgtaaatttcagaaaccaaggctctcctggt |
773 |
Q |
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| T |
4841397 |
atgttatttctaacgcaggaggtaggtaatctgcaaaatgtttacaccatgctgccgctgatgttcaaacgtaaatttcagaaaccaaggctctcctgtt |
4841496 |
T |
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| Q |
774 |
gga |
776 |
Q |
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||| |
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| T |
4841497 |
gga |
4841499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 4832352 - 4832442
Alignment:
| Q |
128 |
ttttttaaagtgatgaagacattttaatattgtgtagttattttct-aaatatagaaagctttgagattttaaagaagtctaaactaactt |
217 |
Q |
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| T |
4832352 |
ttttttaaagcgatgaagatattctaatattgtgtagttattctcttaaatatagaaagctttgagattttgaataagtctaaactaactt |
4832442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 798 - 855
Target Start/End: Original strand, 4841495 - 4841552
Alignment:
| Q |
798 |
ttggagtcattgtacctcaggtatctatacaacaaagtctgggtatagatggttgaat |
855 |
Q |
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| T |
4841495 |
ttggagtcattgtacctcaggtatctatacaacaaagtctgggtatagatggttgaat |
4841552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 4839398 - 4839469
Alignment:
| Q |
502 |
ccttgcgaaaaatagtaagagctcacctattttgaatgctattgttaaagcctttcaaatgatgaaggatgg |
573 |
Q |
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| T |
4839398 |
ccttgcgagaaatggcaagggctcacctgtttggaatgctattgttaaagcctttcaaatgatgaaggatgg |
4839469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 4841076 - 4841130
Alignment:
| Q |
273 |
aagttaatttcacttgtatgcggttttctcattaataagctagcatcttggaaag |
327 |
Q |
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| T |
4841076 |
aagttaatttcacttgtatgcagttttgtcattaataagctagcatcttggaaag |
4841130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 4832247 - 4832293
Alignment:
| Q |
17 |
tgaactaccattataaataaaggtctagctatccattttttcatgca |
63 |
Q |
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| T |
4832247 |
tgaactaccattataaataaaggtgtagctatcctgtttttcatgca |
4832293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 48542804 - 48542882
Alignment:
| Q |
594 |
ggtacgaaccttggttgctaaaggatcctttatgcaatcttgtaccgtttgttcatattcaagatattgatcttcaaat |
672 |
Q |
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| T |
48542804 |
ggtacgaaccttggttgctaaaagatcatgtatgtcatcttgtgtcatttgttcaaatacaagatattgatcttcaaat |
48542882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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