View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15372_high_4 (Length: 845)

Name: NF15372_high_4
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15372_high_4
NF15372_high_4
[»] chr6 (12 HSPs)
chr6 (1-343)||(413254-413594)
chr6 (348-594)||(413636-413878)
chr6 (689-833)||(413956-414100)
chr6 (347-403)||(28918221-28918277)
chr6 (347-403)||(31412957-31413013)
chr6 (348-403)||(1195389-1195444)
chr6 (30-102)||(5053724-5053796)
chr6 (29-84)||(5096031-5096086)
chr6 (39-90)||(30679603-30679654)
chr6 (24-79)||(32945440-32945495)
chr6 (348-436)||(6358213-6358302)
chr6 (29-102)||(28085573-28085646)
[»] chr2 (17 HSPs)
chr2 (347-410)||(1730102-1730165)
chr2 (347-410)||(32840153-32840216)
chr2 (347-438)||(45094432-45094524)
chr2 (347-438)||(13017799-13017891)
chr2 (347-438)||(30698301-30698393)
chr2 (29-103)||(8180977-8181051)
chr2 (29-102)||(13443920-13443993)
chr2 (347-403)||(7167628-7167684)
chr2 (347-438)||(7227973-7228065)
chr2 (347-403)||(8736402-8736458)
chr2 (347-403)||(21504506-21504562)
chr2 (24-79)||(8197576-8197631)
chr2 (24-79)||(8202336-8202391)
chr2 (40-79)||(26202945-26202984)
chr2 (347-389)||(14306768-14306810)
chr2 (24-82)||(32402692-32402750)
chr2 (28-102)||(33504420-33504494)
[»] chr8 (18 HSPs)
chr8 (347-438)||(8049274-8049366)
chr8 (347-461)||(9982633-9982748)
chr8 (347-403)||(29611426-29611482)
chr8 (347-403)||(31976553-31976609)
chr8 (347-403)||(33986060-33986116)
chr8 (347-403)||(6416240-6416296)
chr8 (347-403)||(13144639-13144695)
chr8 (347-403)||(26520410-26520466)
chr8 (347-460)||(44889351-44889466)
chr8 (347-459)||(28324633-28324747)
chr8 (345-403)||(43167695-43167753)
chr8 (347-392)||(40734072-40734117)
chr8 (347-403)||(14294-14350)
chr8 (26-102)||(12611691-12611767)
chr8 (24-84)||(23492226-23492286)
chr8 (347-438)||(33377268-33377360)
chr8 (347-403)||(34008837-34008893)
chr8 (29-102)||(25473415-25473488)
[»] chr5 (16 HSPs)
chr5 (347-403)||(34105127-34105183)
chr5 (347-403)||(12479963-12480019)
chr5 (347-403)||(14834880-14834936)
chr5 (347-403)||(9894280-9894336)
chr5 (347-438)||(22766972-22767064)
chr5 (347-438)||(22303828-22303920)
chr5 (347-403)||(28490048-28490104)
chr5 (347-403)||(33146229-33146285)
chr5 (347-403)||(37241068-37241124)
chr5 (182-233)||(7430716-7430767)
chr5 (25-84)||(12576890-12576949)
chr5 (347-457)||(32250056-32250167)
chr5 (364-438)||(40090389-40090464)
chr5 (349-390)||(6772173-6772214)
chr5 (347-400)||(22305153-22305206)
chr5 (29-102)||(38685164-38685237)
[»] chr1 (23 HSPs)
chr1 (347-403)||(41822504-41822560)
chr1 (347-403)||(41822658-41822714)
chr1 (347-402)||(21267771-21267826)
chr1 (347-410)||(49659265-49659328)
chr1 (347-409)||(35491207-35491269)
chr1 (347-438)||(31166330-31166422)
chr1 (24-78)||(10569107-10569161)
chr1 (29-102)||(9592931-9593004)
chr1 (347-404)||(43622939-43622996)
chr1 (347-438)||(946933-947025)
chr1 (24-80)||(6025797-6025853)
chr1 (347-403)||(32128086-32128142)
chr1 (347-403)||(37447320-37447376)
chr1 (24-84)||(38869074-38869134)
chr1 (347-403)||(39887183-39887239)
chr1 (347-403)||(47820269-47820325)
chr1 (347-403)||(50471806-50471862)
chr1 (347-402)||(28632547-28632602)
chr1 (24-67)||(40920576-40920619)
chr1 (348-403)||(41823122-41823177)
chr1 (29-102)||(25979243-25979316)
chr1 (29-102)||(34792361-34792434)
chr1 (29-102)||(52921277-52921350)
[»] chr7 (22 HSPs)
chr7 (347-403)||(18789193-18789249)
chr7 (347-403)||(19865501-19865557)
chr7 (347-410)||(40667390-40667453)
chr7 (28-102)||(34341407-34341481)
chr7 (354-441)||(22391541-22391629)
chr7 (347-438)||(25189173-25189265)
chr7 (347-403)||(26416009-26416065)
chr7 (347-403)||(32650629-32650685)
chr7 (376-438)||(5976550-5976613)
chr7 (347-409)||(30629107-30629169)
chr7 (347-404)||(30080748-30080805)
chr7 (347-439)||(30524274-30524367)
chr7 (347-403)||(3905606-3905662)
chr7 (347-403)||(18789573-18789629)
chr7 (347-403)||(43791146-43791202)
chr7 (347-403)||(45984396-45984452)
chr7 (347-403)||(45988756-45988812)
chr7 (347-460)||(23548558-23548673)
chr7 (347-410)||(42816598-42816661)
chr7 (347-392)||(18926768-18926813)
chr7 (29-102)||(28208340-28208413)
chr7 (29-102)||(37618142-37618215)
[»] chr4 (22 HSPs)
chr4 (347-438)||(1539661-1539753)
chr4 (347-438)||(46242505-46242597)
chr4 (348-403)||(17727121-17727176)
chr4 (31-102)||(25755515-25755586)
chr4 (347-403)||(42776693-42776749)
chr4 (347-403)||(52295006-52295062)
chr4 (347-403)||(56339189-56339245)
chr4 (348-403)||(42775661-42775716)
chr4 (377-462)||(55266852-55266939)
chr4 (24-90)||(29209199-29209265)
chr4 (348-390)||(56118592-56118634)
chr4 (347-403)||(27284623-27284679)
chr4 (347-403)||(40338213-40338269)
chr4 (24-84)||(47372843-47372903)
chr4 (347-390)||(13318620-13318663)
chr4 (347-390)||(31947660-31947703)
chr4 (24-75)||(55029013-55029064)
chr4 (28-102)||(20105530-20105604)
chr4 (347-459)||(35470120-35470234)
chr4 (29-102)||(1777029-1777102)
chr4 (24-77)||(7970418-7970471)
chr4 (29-102)||(37798048-37798121)
[»] chr3 (16 HSPs)
chr3 (347-404)||(46706707-46706764)
chr3 (347-438)||(42005913-42006005)
chr3 (29-91)||(54279217-54279279)
chr3 (347-403)||(21307492-21307548)
chr3 (24-84)||(21862771-21862831)
chr3 (347-403)||(47284163-47284219)
chr3 (347-438)||(47767452-47767544)
chr3 (347-403)||(53470389-53470445)
chr3 (24-68)||(55244470-55244514)
chr3 (347-459)||(30767102-30767217)
chr3 (347-390)||(35279882-35279925)
chr3 (349-438)||(30766573-30766663)
chr3 (347-459)||(48947603-48947717)
chr3 (349-438)||(50168572-50168662)
chr3 (29-102)||(7895892-7895965)
chr3 (362-403)||(9007430-9007471)
[»] scaffold0129 (2 HSPs)
scaffold0129 (347-434)||(19222-19309)
scaffold0129 (347-403)||(19746-19802)
[»] scaffold0400 (1 HSPs)
scaffold0400 (347-438)||(4459-4551)
[»] scaffold0365 (1 HSPs)
scaffold0365 (347-438)||(5103-5195)
[»] scaffold0169 (1 HSPs)
scaffold0169 (347-403)||(4131-4187)
[»] scaffold0337 (1 HSPs)
scaffold0337 (347-390)||(15827-15870)
[»] scaffold0318 (1 HSPs)
scaffold0318 (347-390)||(2935-2978)
[»] scaffold0065 (1 HSPs)
scaffold0065 (347-390)||(2869-2912)
[»] scaffold0039 (1 HSPs)
scaffold0039 (347-410)||(109080-109143)
[»] scaffold0024 (1 HSPs)
scaffold0024 (29-102)||(82915-82988)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 413254 - 413594
Alignment:
Q  1 cattgttttgtgcagtctataacgatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggc 100  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  413254 cattgttttgtgcagtcta--acgatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccacttaatagaataaggt 413351  T
Q  101 ttcattaatgttgctgctacataagcttcaactataaatttccaagatattgaataaattgcatgttgtaatgatagaaattgaaaatgcattgtggaat 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413352 ttcgttaatgttgctgctacataagcttcaactataaatttccaagatattgaataaattgcatgttgtaatgatagaaattgaaaatgcattgtggaat 413451  T
Q  201 tggttggacatttgtaatgaacacaggattttcgagagctatatattgtaagtgattctttaaagtctattggtctctagtttgcacatttatatttaga 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  413452 tggttggacatttgtaatgaacacaggattttcaagagctatatattgtaagtgattctttaaagtctattggtctctagtctgcacatttatatttaga 413551  T
Q  301 ggcatgtgttcagctaagtttcttgtttaatttattttaactt 343  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  413552 ggcatgtgttcagctaagtttcttgtttaatttaatttaactt 413594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 348 - 594
Target Start/End: Original strand, 413636 - 413878
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattccacaaaatattatattacctcaaaacattatccatcta 447  Q
    ||||| |||||||||||||||||||| |||| ||||||||||| || |||||||||||||||  |||||||||| |||| || ||||||||||||||| |    
T  413636 attttaaaaattattcaaattattataaaaaaaatgaaattcacctcaaagtatttatattcaccaaaatattacattatctgaaaacattatccatcca 413735  T
Q  448 aatacactctaaagaaaggccatgaactcctttttctcgagttttatttcatatatattgtcgtattgtaggggttattttgtttcctcatctagttcat 547  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  413736 aatacactctaaagaaaggccatgaactcatttttcttgagttttatttc----atattgtcgtattataggggttatttcgtttcctcatctagttcat 413831  T
Q  548 taataaatccctcttattataaaaaatgtgatatgagatgttgaact 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  413832 taataaatccctcttattataaaaaatgtgatatgagatgttgaact 413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 689 - 833
Target Start/End: Original strand, 413956 - 414100
Alignment:
Q  689 atataatcaattaagttaattaattacttttaaaagggggaggactaatgattttctagaagccattgcctttcttgttcaaaaagtaagttgttaaaat 788  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413956 atataatcaatcaagttaattaattacttttaaaagggggaggactaatgattttctagaagccattgcctttcttgttcaaaaagtaagttgttaaaat 414055  T
Q  789 atttatttctatatattgaccaaataaataataatataaatgatg 833  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  414056 atttatttatatatattgaccaaataaataataatataaatgatg 414100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 28918277 - 28918221
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| || |||||||||    
T  28918277 cattttgaaaatccttcaaattattatccaaacaatgaaattcacctcaaagtattt 28918221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 31413013 - 31412957
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| | |||||||||    
T  31413013 cattttgaaaattcttcaaattattatccaaacaatggaattcatatcaaagtattt 31412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 1195444 - 1195389
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||||||||| |||||||||||||| |||||||| |||||| || |||||||||    
T  1195444 attttgaaaattcttcaaattattatctaaacaatggaattcacctcaaagtattt 1195389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 5053724 - 5053796
Alignment:
Q  30 aatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||||||||||||||| |  ||| | | ||| |||||||||||||||||| |||||||| ||| |||||||||    
T  5053724 aatatggtatatgataaagcattgttgcgtcgtttgatcaatgtagccgaccccatttagtaggataaggctt 5053796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 5096031 - 5096086
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 84  Q
    ||||||||| |||||||||| ||||| | || |||||||| |||||||||||||||    
T  5096031 aaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatccca 5096086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 30679603 - 30679654
Alignment:
Q  39 tatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaat 90  Q
    |||||||||| ||||||  ||||||||||| ||||||||||||||| |||||    
T  30679603 tatgatagaacattataacgtcatttgatctatgtagccgatcccacttaat 30679654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 32945440 - 32945495
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 79  Q
    |||||||||||  |||||||||||| ||||| ||||| ||||||| ||||||||||    
T  32945440 gatagaaatattttatatgatagaacattatggtgtcgtttgatccatgtagccga 32945495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 6358213 - 6358302
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattc-cacaaaatattatattacctcaaaaca 436  Q
    |||||||||||| |||||||||||||   ||||||  |||||| |  |||||||||| |||| | ||||| |||| ||||||||||||||    
T  6358213 attttgaaaattcttcaaattattattctaacaatagaattcaccacaaagtatttaaattctctcaaaacattacattacctcaaaaca 6358302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 28085573 - 28085646
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||| ||||||||||||| |||||||||| |||| ||| | | |||||||||    
T  28085573 aaatttggtgtatgatagaacactatggtgtcatttgatccatgtagccgaccccacttagtgggataaggctt 28085646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 1730165 - 1730102
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc 410  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  1730165 cattttgaaaattcttcaaattattatccaaacaatgaaattcatctcaaagtatttaaattcc 1730102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 32840153 - 32840216
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc 410  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||| |||||    
T  32840153 cattttgaaaattcttcaaattattatccaaacaatgaaattcacctcaaagtatttaaattcc 32840216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 45094432 - 45094524
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||||| ||||| |||||||| ||||||  |||||||| ||| ||| || ||||| |||||||| ||||||||||||    
T  45094432 cattttgaaaattcttcaaattcttatccaaacaatggaattcactttaaagtagttaaattccctcaaaacattatattccctcaaaacatt 45094524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 13017891 - 13017799
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| || |||||||||  ||| ||  ||||||||| ||| ||||||||||||    
T  13017891 cattttgaaaatccttcaaattattatccaaacaatggaattcacctcaaagtatttgaattcccttaaaatattacattccctcaaaacatt 13017799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 30698393 - 30698301
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||| || || ||||||  |||||  ||||| |||| ||| ||||||||||||    
T  30698393 cattttgaaaattcttcaaactattatccaaacaatgaaattcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacatt 30698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 8180977 - 8181051
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggcttc 103  Q
    |||| |||| |||||||||| | ||||||||||||||||| |||||||||| |||| ||| | | ||||||||||    
T  8180977 aaatttggtgtatgatagaacactatagtgtcatttgatccatgtagccgaccccacttagtgggataaggcttc 8181051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 13443993 - 13443920
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||| ||| |||||| ||||| | ||||||||||| |||||||||| |||||||| | | |||||||||    
T  13443993 aaatatggtttattatagaacattatggcgtcatttgatcgatgtagccgaccccatttagtgggataaggctt 13443920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 7167628 - 7167684
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||| ||||| | ||||||||||||||| || |||||||||    
T  7167628 cattttgaaaattcttcaaactattacccaaacaatgaaattcacctcaaagtattt 7167684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 7227973 - 7228065
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||| ||||||| ||||||||||||| | || || ||||||| |||||  ||||| |||| |||  |||||||||||    
T  7227973 cattttgaaaattcttcaaactattatccaaacaatgaaatttacctcaaggtatttaaattccttcaaaacattacattctctcaaaacatt 7228065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 8736402 - 8736458
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| || ||||||||||| |||||||| |||||| || |||||||||    
T  8736402 cattttgaaaattctttaaattattatccaaacaatggaattcacctcaaagtattt 8736458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 21504562 - 21504506
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||  |||||||| ||||||||| ||| |||||    
T  21504562 cattttgaaaattcttcaaattattattcaaacaatggaattcatctcaaaatattt 21504506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 8197631 - 8197576
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 79  Q
    |||||||||||| |||||||||||| ||||| | ||| ||||||| ||||||||||    
T  8197631 gatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccga 8197576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 8202391 - 8202336
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccga 79  Q
    |||||||||||| |||||||||||| ||||| | ||| ||||||| ||||||||||    
T  8202391 gatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccga 8202336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 26202984 - 26202945
Alignment:
Q  40 atgatagaagattatagtgtcatttgatcaatgtagccga 79  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  26202984 atgatagaagattatagcgtcatttgatccatgtagccga 26202945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 14306768 - 14306810
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattc 389  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||    
T  14306768 cattttaaaaattatttaaattattatccaaacaatgaaattc 14306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 32402692 - 32402750
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcc 82  Q
    |||||||||| |||||||||||||| ||||| || |||||||||| | |||| ||||||    
T  32402692 gatagaaataaggtatatgatagaacattatggtttcatttgatccacgtagacgatcc 32402750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 33504420 - 33504494
Alignment:
Q  28 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||||||||||||||| ||||| | || |||||||| || ||||||| |||| ||| | | |||||||||    
T  33504420 gaaatatggtatatgatagaacattatggcgtaatttgatccatctagccgaccccacttagtgggataaggctt 33504494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 8049366 - 8049274
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||||||||||| ||||||||||||| | || |||||||||  ||| || ||||| |||||||| ||||||||||||    
T  8049366 cattttgaaaattcttcaaattattatccaaacaatgaaatttacctcaaagtatttgaattccctcaaaacattatattccctcaaaacatt 8049274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 347 - 461
Target Start/End: Complemental strand, 9982748 - 9982633
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattc-cacaaaatattatattacctcaaaacattatccatc 445  Q
    |||||| |||||| |||||||||||||| |||||||| |||||| || ||| |||||| |||| | ||||| |||| ||||||| |||||||| ||||||    
T  9982748 cattttaaaaattcttcaaattattatctaaacaatggaattcacctcaaaatatttaaattctctcaaaacattacattaccttaaaacattctccatc 9982649  T
Q  446 taaatacactctaaag 461  Q
     ||| || ||||||||    
T  9982648 caaacacgctctaaag 9982633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 29611482 - 29611426
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||    
T  29611482 cattttgaaaattcttcaaattattatccaaacaatgaaattcacctcaaagtattt 29611426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 31976553 - 31976609
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||    
T  31976553 cattttgaaaattcttcaaattattatccaaacaatgaaattcatctcaaaatattt 31976609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 33986116 - 33986060
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||    
T  33986116 cattttgaaaattcttcaaattattatctaaacaatgaaattcacctcaaagtattt 33986060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 6416296 - 6416240
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||  | |||||||||    
T  6416296 cattttgaaaattcttcaaattattatcaaaacaatggaattcacttcaaagtattt 6416240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 13144695 - 13144639
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| |||||| || |||||||||    
T  13144695 cattttgaaaattcttcaaattattatccaaacaatggaattcacctcaaagtattt 13144639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 26520410 - 26520466
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| |||||| || |||||||||    
T  26520410 cattttgaaaattcttcaaattattatccaaacaatggaattcacctcaaagtattt 26520466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 347 - 460
Target Start/End: Complemental strand, 44889466 - 44889351
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt-atccat 444  Q
    |||| |||||||| | |||||||||||| |||||||| ||||||  | |||||||||  ||| || ||||| |||||||| ||||||||||||  |||||    
T  44889466 cattatgaaaattctacaaattattatccaaacaatggaattcacatcaaagtatttgaattccctcaaaacattatattccctcaaaacattcctccat 44889367  T
Q  445 ctaaatacactctaaa 460  Q
    | ||| ||||||||||    
T  44889366 ccaaacacactctaaa 44889351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 459
Target Start/End: Original strand, 28324633 - 28324747
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt-atccat 444  Q
    ||||||||||||| |||||| ||||||| |||||||| |||||| || || ||||||  |||||  ||||| |||| ||| ||||||||||||  |||||    
T  28324633 cattttgaaaattcttcaaactattatccaaacaatgtaattcagctcaaggtatttgaattccttcaaaacattacattccctcaaaacattcctccat 28324732  T
Q  445 ctaaatacactctaa 459  Q
    | ||| |||||||||    
T  28324733 ccaaacacactctaa 28324747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 43167695 - 43167753
Alignment:
Q  345 aacattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||||| |||||||||||||| ||||||  ||||||| || |||||||||    
T  43167695 aacattttgaaaattcttcaaattattatctaaacaactaaattcacctcaaagtattt 43167753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 40734072 - 40734117
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatc 392  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||    
T  40734072 cattttgaaaatgcttcaaattattatcaaaacaatggaattcatc 40734117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 14350 - 14294
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| |  |||||||||    
T  14350 cattttgaaaatacttcaaattattatctaaacaatgaaattcaccccaaagtattt 14294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 12611691 - 12611767
Alignment:
Q  26 tagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||||||||| |||||| |||||  |||| ||||| ||||||| ||||||||||||||| ||| | | |||||||||    
T  12611691 tagaaatatgatatatgttagaactttatggtgtcgtttgatccatgtagccgatcccaattagtgggataaggctt 12611767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 23492226 - 23492286
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 84  Q
    |||||||||||| |||||||||||| | ||| ||||||||| ||| |||||||||| ||||    
T  23492226 gatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagccgacccca 23492286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 33377268 - 33377360
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  |||||||||  ||| || ||||| | |||||| ||||||||||||    
T  33377268 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaagtatttgaattccctcaaaacaatatattccctcaaaacatt 33377360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 34008893 - 34008837
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| || ||||||||||| |||||||| |||||| || |||||||||    
T  34008893 cattttgaaaattctttaaattattatccaaacaatggaattcacctcaaagtattt 34008837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 25473488 - 25473415
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||||| ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  25473488 aaatttggtgtatgatagaacactatagcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 25473415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 34105183 - 34105127
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  34105183 cattttgaaaattcttcaaattattatccaaacaatgaaattcatctcaaagtattt 34105127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 12480019 - 12479963
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||    
T  12480019 cattttgaaaattcttcaaattattatctaaacaatgaaattcacctcaaagtattt 12479963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 14834936 - 14834880
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||    
T  14834936 cattttgaaaattcttcaaattattatccaaacaatgaaattcacctcaaagtattt 14834880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 9894280 - 9894336
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| |||||| || |||||||||    
T  9894280 cattttgaaaattcttcaaattattatccaaacaatggaattcacctcaaagtattt 9894336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 22767064 - 22766972
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    |||| |||||||| || ||||||||||| |||||||  |||||| ||||||||||||  ||| || ||||| |||||||| ||||||||||||    
T  22767064 cattctgaaaattctttaaattattatccaaacaatagaattcaccttaaagtatttgaattccctcaaaacattatattccctcaaaacatt 22766972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 22303828 - 22303920
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||| ||||| | ||||||||||||||| || || ||||||  |||||  ||||| |||| ||| ||||||||||||    
T  22303828 cattttgaaaattcttcaaactattacccaaacaatgaaattcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacatt 22303920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 28490104 - 28490048
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||||||||||  ||||||||||||| |||||||| |||||| || |||||||||    
T  28490104 cattttgaaaattcctcaaattattatccaaacaatggaattcacctcaaagtattt 28490048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 33146285 - 33146229
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| || ||||||||||| |||||||| |||||| || |||||||||    
T  33146285 cattttgaaaattctttaaattattatccaaacaatggaattcacctcaaagtattt 33146229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 37241068 - 37241124
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||| |||||| |||||||||||||| |||||||| |||||| || |||||||||    
T  37241068 cattttaaaaattcttcaaattattatccaaacaatggaattcacctcaaagtattt 37241124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 7430767 - 7430716
Alignment:
Q  182 tgaaaatgcattgtggaattggttggacatttgtaatgaacacaggattttc 233  Q
    ||||||||  |||||||||||| ||||||||||||||||||| ||| |||||    
T  7430767 tgaaaatgtcttgtggaattggctggacatttgtaatgaacataggcttttc 7430716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 12576949 - 12576890
Alignment:
Q  25 atagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 84  Q
    |||||||||||||||||||||||  ||||| ||||||||| ||  |||||||||| ||||    
T  12576949 atagaaatatggtatatgatagaccattatggtgtcattttatacatgtagccgacccca 12576890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 457
Target Start/End: Original strand, 32250056 - 32250167
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacattatccatc 445  Q
    |||||| |||||| || ||||||||||| |||||||| ||||||||| || ||||||  ||| || ||||| ||||  || ||||||||||||  |||||    
T  32250056 cattttaaaaattctttaaattattatccaaacaatggaattcatctcaaggtatttgaattccctcaaaacattactttccctcaaaacattccccatc 32250155  T
Q  446 taaatacactct 457  Q
     ||| |||||||    
T  32250156 caaacacactct 32250167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 438
Target Start/End: Original strand, 40090389 - 40090464
Alignment:
Q  364 aaattattatcaaaacaatgaaattcatcttaaagtatttatattcca-caaaatattatattacctcaaaacatt 438  Q
    ||||||||||| |||||||| |||||| || |||||||||  |||||| ||||| |||| ||| ||||||||||||    
T  40090389 aaattattatccaaacaatggaattcacctcaaagtatttgaattccatcaaaacattacatttcctcaaaacatt 40090464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 6772173 - 6772214
Alignment:
Q  349 ttttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  6772173 ttttgataattattcaaattatcatccaaacaatgaaattca 6772214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 22305206 - 22305153
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagta 400  Q
    ||||||||||||| | |||||||||||| |||||||| |||||| || ||||||    
T  22305206 cattttgaaaattctacaaattattatccaaacaatggaattcacctcaaagta 22305153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38685164 - 38685237
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  38685164 aaatatggtttatgatagaacaatatggcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 38685237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 41822504 - 41822560
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  41822504 cattttgaaaattcttcaaattattatccaaacaatggaattcatcttaaagtattt 41822560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 41822658 - 41822714
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||    
T  41822658 cattttgaaaattcttcaaattattatccaaacaatggaattcatctcaaagtattt 41822714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 21267771 - 21267826
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatt 402  Q
    ||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||    
T  21267771 cattttgaaaattcttcaaattattatccaaacaatgaaatttatctcaaagtatt 21267826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 49659328 - 49659265
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc 410  Q
    ||||||||||||| |||||||||||||| |||||||| |||||| || |||||||||| |||||    
T  49659328 cattttgaaaattcttcaaattattatccaaacaatggaattcacctcaaagtatttaaattcc 49659265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 35491269 - 35491207
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattc 409  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| | ||| |||||| ||||    
T  35491269 cattttgaaaattcttcaaattattatccaaacaatgaaattcatatcaaaatatttaaattc 35491207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 31166422 - 31166330
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcca-caaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||||||||||  |||||||  ||||||||| ||| |||||  |||||| ||||| |||| |||| |||||||||||    
T  31166422 cattttgaaaattcttcaaattattattcaaacaatagaattcatctcaaaatatttgcattccatcaaaacattacattatctcaaaacatt 31166330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 10569161 - 10569107
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccg 78  Q
    ||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||    
T  10569161 gatagaaatatcgtatatgatagaacattataatatcatttgatccatgtagccg 10569107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 9592931 - 9593004
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||||| ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  9592931 aaatttggtgtatgatagaacactatagcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 9593004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 43622939 - 43622996
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattta 404  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||| || ||||||||||    
T  43622939 cattttgaaaattcttcaaattattattcaaataatgaaattcacctcaaagtattta 43622996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 947025 - 946933
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt-atattccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| || | ||||||| |  |||| ||||||| || ||| ||||||||||||    
T  947025 cattttgaaaatgcttcaaattattatccaaacaatggaattcacctcatagtatttgaatttcctcaaaataatacattccctcaaaacatt 946933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 6025797 - 6025853
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgat 80  Q
    |||||||||||||||| |||||||| || || | ||||||||||| |||||||||||    
T  6025797 gatagaaatatggtatctgatagaacatgatggcgtcatttgatccatgtagccgat 6025853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 32128142 - 32128086
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||| |  |||||||||    
T  32128142 cattttgaaaattcttcaaattattattaaaacaatggaattcaccacaaagtattt 32128086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 37447320 - 37447376
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||  | |||||||||    
T  37447320 cattttgaaaattcttcaaattattatccaaacaatggaattcacatcaaagtattt 37447376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 38869074 - 38869134
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 84  Q
    |||||| |||||||||||||||||| ||||| | ||| ||||||| |||||||||| ||||    
T  38869074 gatagatatatggtatatgatagaacattatggcgtcgtttgatccatgtagccgacccca 38869134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 39887239 - 39887183
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||  | |||||||||    
T  39887239 cattttgaaaattcttcaaattattatccaaacaatggaattcacatcaaagtattt 39887183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 47820325 - 47820269
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||| |||||  |||||||||||||| ||||||||||||||| | ||||||||||    
T  47820325 cattttaaaaatgcttcaaattattatccaaacaatgaaattcaccctaaagtattt 47820269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 50471862 - 50471806
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| || ||||||||||| ||||||| ||||||| || |||||||||    
T  50471862 cattttgaaaattctttaaattattatccaaacaataaaattcacctgaaagtattt 50471806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 28632547 - 28632602
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatt 402  Q
    ||||||||||||| || ||||||||||| |||||||| |||||| || ||||||||    
T  28632547 cattttgaaaattctttaaattattatccaaacaatggaattcacctcaaagtatt 28632602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 40920619 - 40920576
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgat 67  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  40920619 gatagaaatatggtatatgatagaatattatggtgtcttttgat 40920576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 41823122 - 41823177
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||||||||| |||||| ||||||| |||||||| ||||||||| || ||||||    
T  41823122 attttgaaaattcttcaaactattatccaaacaatggaattcatctcaaggtattt 41823177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 25979316 - 25979243
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  25979316 aaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 25979243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 34792434 - 34792361
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  34792434 aaatttggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 34792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 52921277 - 52921350
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  52921277 aaatatggtttatgatagaacactattgcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 52921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 18789193 - 18789249
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||||    
T  18789193 cattttgaaaattcttcaaattattatccaaacaatggaattcaccttaaagtattt 18789249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 19865501 - 19865557
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| || ||||||||||||||||||||||||||| || |||||||||    
T  19865501 cattttgaaaattctttaaattattatcaaaacaatgaaattcacctcaaagtattt 19865557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 40667453 - 40667390
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc 410  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||  |||||||||| |||||    
T  40667453 cattttgaaaatgcttcaaattattatccaaacaatgaaattcatcccaaagtatttaaattcc 40667390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 34341481 - 34341407
Alignment:
Q  28 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||||||||| |||||||||| ||||| | || |||||| |||||||||||| |||||||| | |||||||||||    
T  34341481 gaaatatggtttatgatagaacattatggcgtaatttgaccaatgtagccgaccccatttagtggaataaggctt 34341407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 22391541 - 22391629
Alignment:
Q  354 aaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattc-cacaaaatattatattacctcaaaacattatc 441  Q
    |||||| || ||||||||||| ||||||||||||||| || ||| |||||| |||| | ||||| |||| ||| |||||||||||||||    
T  22391541 aaaattctttaaattattatccaaacaatgaaattcacctcaaaatatttaaattctctcaaaacattacattccctcaaaacattatc 22391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 25189173 - 25189265
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||  | |||||||||  ||| || ||||| |||  ||||||||||||||||    
T  25189173 cattttgaaaattcttcaaattatcatccaaacaatgaaattcacttcaaagtatttgaattccctcaaaacattgcattacctcaaaacatt 25189265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 26416065 - 26416009
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||| |||||||||| || |||||||||    
T  26416065 cattttgaaaattcttcaaattattatccaaaccatgaaattcacctcaaagtattt 26416009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 32650685 - 32650629
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||| || |||||||||    
T  32650685 cattttgaaaattcttcaaattattatccaaacaataaaattcacctcaaagtattt 32650629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 5976550 - 5976613
Alignment:
Q  376 aaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||||| || ||| ||||| |||| | ||||||||||||||||||||||||||||    
T  5976550 aaacaatgaaattcagctaaaaatatttgtattacgacaaaatattatattacctcaaaacatt 5976613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 30629169 - 30629107
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattc 409  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| |  |||||||||| ||||    
T  30629169 cattttgaaaatccttcaaattattatccaaacaatgaaattcaccccaaagtatttaaattc 30629107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 30080748 - 30080805
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattta 404  Q
    ||||||||||||| |||||||||| ||| |||||||| |||||| || ||||||||||    
T  30080748 cattttgaaaattcttcaaattatcatccaaacaatggaattcacctgaaagtattta 30080805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 439
Target Start/End: Complemental strand, 30524367 - 30524274
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatta 439  Q
    |||||| |||||  |||||||||||||| |||||||||||||||||  |||||||||  ||| || ||||| |||| ||| | |||||||||||    
T  30524367 cattttaaaaatatttcaaattattatccaaacaatgaaattcatcccaaagtatttgaattccctcaaaacattacattccttcaaaacatta 30524274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 3905606 - 3905662
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||  |||||| || |||||||||    
T  3905606 cattttgaaaattcttcaaattattatccaaacaatagaattcacctcaaagtattt 3905662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 18789629 - 18789573
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||| |||||| |||||||||||||| |||||||| |||||| || |||||||||    
T  18789629 cattttaaaaattcttcaaattattatctaaacaatggaattcacctcaaagtattt 18789573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 43791202 - 43791146
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||| | |||| || |||||||||    
T  43791202 cattttgaaaattcttcaaattattatccaaacaatggagttcacctcaaagtattt 43791146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 45984452 - 45984396
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||  |||||| || |||||||||    
T  45984452 cattttgaaaattcttcaaattattatccaaacaattgaattcacctcaaagtattt 45984396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 45988812 - 45988756
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||  |||||| || |||||||||    
T  45988812 cattttgaaaattcttcaaattattatccaaacaattgaattcacctcaaagtattt 45988756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 460
Target Start/End: Original strand, 23548558 - 23548673
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt-atattccacaaaatattatattacctcaaaacatt-atccat 444  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  ||||||||| |  |||| ||||| | || ||| ||||||||||||  |||||    
T  23548558 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaagtatttgaatttcctcaaaacaatacattccctcaaaacattcctccat 23548657  T
Q  445 ctaaatacactctaaa 460  Q
    | ||| ||||||||||    
T  23548658 ccaaacacactctaaa 23548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 42816661 - 42816598
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc 410  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  |||||||||| |||||    
T  42816661 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaagtatttaaattcc 42816598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 18926768 - 18926813
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatc 392  Q
    |||||||||| || |||||||||| ||| |||||||||||||||||    
T  18926768 cattttgaaattttttcaaattatcatccaaacaatgaaattcatc 18926813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 28208413 - 28208340
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||| | | |||||||||    
T  28208413 aaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggctt 28208340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 37618142 - 37618215
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||| ||||||||||||| |||||||||| |||| ||| | | |||||||||    
T  37618142 aaatttggtgtatgatagaacactatggtgtcatttgatccatgtagccgaccccacttagtgggataaggctt 37618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 1539753 - 1539661
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| | |||||||||||| ||||||||||||||| || |||||||||  ||| || ||||| |||| ||| ||||||||||||    
T  1539753 cattttgaaaattctacaaattattatccaaacaatgaaattcacctcaaagtatttgaattccctcaaaacattacattccctcaaaacatt 1539661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 46242505 - 46242597
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| ||||||||||| || |||||||| |||||| || |||||||||  |||||  ||||| |||||||| ||||||||||||    
T  46242505 cattttgaaaattcttcaaattattctccaaacaatggaattcacctcaaagtattttgattccttcaaaacattatatttcctcaaaacatt 46242597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 17727176 - 17727121
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||||||||| |||||||||||||| ||||||||||||||| || |||||||||    
T  17727176 attttgaaaattcttcaaattattatccaaacaatgaaattcacctcaaagtattt 17727121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 25755515 - 25755586
Alignment:
Q  31 atatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||| ||||| |||||| ||||||||||||||||||| ||| || |||||||||||||| | |||||||||    
T  25755515 atatgatatatcatagaacattatagtgtcatttgatccatgaagtcgatcccatttaatgggataaggctt 25755586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 42776749 - 42776693
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||| || |||||||||    
T  42776749 cattttgaaaattcttcaaattatcatccaaacaatgaaattcacctaaaagtattt 42776693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 52295006 - 52295062
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||| ||| |||||    
T  52295006 cattttgaaaattcttcaaattattatccaaacaatgaaattcgtctcaaaatattt 52295062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 56339245 - 56339189
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||||||||||  | |||||||||    
T  56339245 cattttgaaaattcttcaaattattatccaaacaatgaaattcacatcaaagtattt 56339189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 42775716 - 42775661
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||||| ||||||||||| |||||||| |||||| || |||||||||    
T  42775716 attttgaaaattatttaaattattatccaaacaatggaattcacctcaaagtattt 42775661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 377 - 462
Target Start/End: Original strand, 55266852 - 55266939
Alignment:
Q  377 aacaatgaaattcatcttaaagtatttatattcca-caaaatattatattacctcaaaacatt-atccatctaaatacactctaaaga 462  Q
    |||||| ||||||| ||||||||| ||  |||||  |||||||||||||| |||||||||||| ||||||| ||| ||||||||||||    
T  55266852 aacaataaaattcaccttaaagtagttgaattccctcaaaatattatatttcctcaaaacattcatccatccaaacacactctaaaga 55266939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 29209265 - 29209199
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaat 90  Q
    ||||||||||||||||||||||||  ||||| | ||  |||||||||||||||||| |||| |||||    
T  29209265 gatagaaatatggtatatgatagagcattatggcgttgtttgatcaatgtagccgaccccacttaat 29209199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 56118592 - 56118634
Alignment:
Q  348 attttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  56118592 attttgaaaattattcaaattattattcaaacaatgaaattca 56118634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 27284623 - 27284679
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    |||||| |||||||||||||| |||||  ||||||||||||||| || |||||||||    
T  27284623 cattttaaaaattattcaaatcattatacaaacaatgaaattcacctcaaagtattt 27284679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 40338213 - 40338269
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |  ||||||||||| ||||||||||||||| || |||||||||    
T  40338213 cattttgaaaattctgtaaattattatccaaacaatgaaattcacctcaaagtattt 40338269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 47372843 - 47372903
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 84  Q
    |||||||||||||||||| |||||| ||||| | ||| ||||||| |||||||| ||||||    
T  47372843 gatagaaatatggtatattatagaacattatggagtcgtttgatccatgtagcccatccca 47372903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 13318620 - 13318663
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||    
T  13318620 cattttgaaaattcttcaaattattatccaaacaataaaattca 13318663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 31947703 - 31947660
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  31947703 cattttgaaaattcttcaaattattatccaaacaatggaattca 31947660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 55029013 - 55029064
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtag 75  Q
    |||||||||||| |||||||||||| ||||| | |||||||||| |||||||    
T  55029013 gatagaaatatgttatatgatagaacattatggcgtcatttgattaatgtag 55029064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 20105604 - 20105530
Alignment:
Q  28 gaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||||||||||||| | ||||| | ||||||||||| |||||||| ||| || ||| ||| | |||||||    
T  20105604 gaaatatggtatatgataggacattatggcgtcatttgatccatgtagccaatctcacttagtaggacaaggctt 20105530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 35470234 - 35470120
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatatt-ccacaaaatattatattacctcaaaaca-ttatccat 444  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  |||||||||  ||| || ||||| | || ||| |||||||||| ||  ||||    
T  35470234 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaagtatttgaattccctcaaaacaatacattccctcaaaacatttcaccat 35470135  T
Q  445 ctaaatacactctaa 459  Q
    ||||| |||||||||    
T  35470134 ctaaacacactctaa 35470120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 1777102 - 1777029
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  1777102 aaatttggtgtatgatagaacagtatggcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 1777029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 7970471 - 7970418
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagcc 77  Q
    ||||||||||| |||||||||| || ||||| ||||| ||||||| ||||||||    
T  7970471 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 7970418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 37798048 - 37798121
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||||| |||||||||| | |||   ||||||||||||||||||||||  ||||||| | | |||||||||    
T  37798048 aaatatggtttatgatagaacaatatgacgtcatttgatcaatgtagccgactccatttagtgggataaggctt 37798121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 46706764 - 46706707
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattta 404  Q
    ||||||||||||| |||||||||||||| |||||||| |||||| || ||||||||||    
T  46706764 cattttgaaaattcttcaaattattatccaaacaatggaattcacctcaaagtattta 46706707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 42005913 - 42006005
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||| ||||| | ||||||||||||||| || || ||||||| |||||  ||||| |||| ||| ||||||||||||    
T  42005913 cattttgaaaattcttcaaactattacccaaacaatgaaattcacctcaaggtatttaaattccttcaaaacattacattccctcaaaacatt 42006005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 54279217 - 54279279
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaata 91  Q
    |||| |||| |||||||||| | ||| | ||||||||||||||||||||||||||| ||||||    
T  54279217 aaatttggtgtatgatagaacactatggcgtcatttgatcaatgtagccgatcccacttaata 54279279  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 21307492 - 21307548
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| | |||||||||||| |||||||| |||||| || |||||||||    
T  21307492 cattttgaaaattttacaaattattatccaaacaatggaattcacctcaaagtattt 21307548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 21862831 - 21862771
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatccca 84  Q
    |||||||||||| |||  ||||||||| ||| ||||||||||||| |||||||||| ||||    
T  21862831 gatagaaatatgatattggatagaagaatatggtgtcatttgatccatgtagccgacccca 21862771  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 47284163 - 47284219
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||  |||||||| ||||||| | |||||||||    
T  47284163 cattttgaaaattcttcaaattattattcaaacaatggaattcatatcaaagtattt 47284219  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 47767544 - 47767452
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||| |||||| ||||||| |||||||| |||||| || || ||||||  |||||  ||||| |||| ||| ||||||||||||    
T  47767544 cattttgaaaattcttcaaactattatccaaacaatgtaattcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacatt 47767452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 53470389 - 53470445
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| |  |||||||||    
T  53470389 cattttgaaaatgcttcaaattattatccaaacaatgaaattcaccccaaagtattt 53470445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 55244470 - 55244514
Alignment:
Q  24 gatagaaatatggtatatgatagaagattatagtgtcatttgatc 68  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||    
T  55244470 gatagaaatatggtatatgatagaacattatggtgtcgtttgatc 55244514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 30767217 - 30767102
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatc-ttaaagtatttatattcc-acaaaatattatattacctcaaaacatta-tcca 443  Q
    ||||||||||||| |||||||||||| | |||||||| |||||| | || ||||||||  |||||  || || |||| ||| |||||||||||||  |||    
T  30767217 cattttgaaaattcttcaaattattacccaaacaatggaattcaccttttaagtatttgaattccttcataacattagattccctcaaaacattacccca 30767118  T
Q  444 tctaaatacactctaa 459  Q
    || |||||||||||||    
T  30767117 tccaaatacactctaa 30767102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 35279882 - 35279925
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  35279882 cattttgaaaattcttcaaattattatccaaacaatgtaattca 35279925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 438
Target Start/End: Complemental strand, 30766663 - 30766573
Alignment:
Q  349 ttttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc-acaaaatattatattacctcaaaacatt 438  Q
    ||||||||||| |||||| ||||||| |||||||| |||||| || || ||||||  |||||  ||||| |||| ||| ||||||||||||    
T  30766663 ttttgaaaattcttcaaactattatccaaacaatggaattcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacatt 30766573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 48947717 - 48947603
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattc-cacaaaatattatattacctcaaaacatt-atccat 444  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  |||||||||  |||| | ||||| | || ||| ||||||||||||  |||||    
T  48947717 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaagtatttgaattctctcaaaacaatacattccctcaaaacattcttccat 48947618  T
Q  445 ctaaatacactctaa 459  Q
    | ||| |||||||||    
T  48947617 ccaaacacactctaa 48947603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 50168572 - 50168662
Alignment:
Q  349 ttttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt-atattccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||| | || ||||||||| |||||||| |||||| || ||| ||||| |  |||| ||||| |||| ||||||||||||||||    
T  50168572 ttttgaaaattctccatattattatccaaacaatggaattcagctaaaattatttgagtttcctcaaaacattacattacctcaaaacatt 50168662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 7895965 - 7895892
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    |||| |||| |||||||||| | ||| | ||||||||||| |||||||||| |||| ||||| | |||||||||    
T  7895965 aaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttaatgggataaggctt 7895892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 9007430 - 9007471
Alignment:
Q  362 tcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| ||||||||||||||| || |||||||||    
T  9007430 tcaaattattatccaaacaatgaaattcacctaaaagtattt 9007471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 347 - 434
Target Start/End: Complemental strand, 19309 - 19222
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattccacaaaatattatattacctcaaaa 434  Q
    |||||| |||||| |||||||||||||| |||||||| |||||| || ||| |||||  ||||| ||||| |||| ||| ||||||||    
T  19309 catttttaaaattcttcaaattattatcgaaacaatggaattcacctcaaaatatttgaattcctcaaaacattacattccctcaaaa 19222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 19746 - 19802
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| ||| |||| |||||| || |||||||||    
T  19746 cattttgaaaattcttcaaattattatctaaataatgtaattcacctcaaagtattt 19802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 4459 - 4551
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt-atattccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  ||| ||||| |  |||| ||||| |||||||| ||||||||||||    
T  4459 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaaatatttgaatttcctcaaaacattatattccctcaaaacatt 4551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 5103 - 5195
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt-atattccacaaaatattatattacctcaaaacatt 438  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| |  ||| ||||| |  |||| ||||| |||||||| ||||||||||||    
T  5103 cattttgaaaatgcttcaaattattatccaaacaatggaattcaccccaaaatatttgaatttcctcaaaacattatattccctcaaaacatt 5195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 4187 - 4131
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtattt 403  Q
    ||||||||||||| |||||||||||||| |||||||  |||||| || |||||||||    
T  4187 cattttgaaaattcttcaaattattatccaaacaatagaattcacctcaaagtattt 4131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 15827 - 15870
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  15827 cattttgaaaattcttcaaattattatccaaacaatggaattca 15870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 2978 - 2935
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  2978 cattttgaaaattcttcaaattattatccaaacaatggaattca 2935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 2869 - 2912
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattca 390  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  2869 cattttgaaaattcttcaaattattatccaaacaatggaattca 2912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 109143 - 109080
Alignment:
Q  347 cattttgaaaattattcaaattattatcaaaacaatgaaattcatcttaaagtatttatattcc 410  Q
    ||||||||||||| |||||||| ||||| |||||||| ||||||  | |||||||||| |||||    
T  109143 cattttgaaaattcttcaaattcttatccaaacaatggaattcacatcaaagtatttaaattcc 109080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 82915 - 82988
Alignment:
Q  29 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccatttaatagaataaggctt 102  Q
    ||||||| | |||||||||| | |||   ||||||||||| |||||||||| |||| ||||| |||||||||||    
T  82915 aaatatgatttatgatagaacactatgacgtcatttgatccatgtagccgaccccacttaatggaataaggctt 82988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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