View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_high_6 (Length: 547)
Name: NF15372_high_6
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 25 - 535
Target Start/End: Original strand, 40353263 - 40353778
Alignment:
| Q |
25 |
tatcctaaaaagaaaaatccaaaccttcggaaattaaaattaaatatattaaacatgaacaataaagggacattgacacactagtatgaattcaattctt |
124 |
Q |
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| T |
40353263 |
tatcctaaaaa-aaatatccaaaccttcggaaattaaaattaaatatattaaacataaacaataaagggacattgacacactagaatgaattcaattctt |
40353361 |
T |
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| Q |
125 |
catttcctgcactatctccataatctatatacgatgaaatctcaatt------gcttaatttttgnnnnnnntagagaaattcagtaccatcgattgctc |
218 |
Q |
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| T |
40353362 |
catttcctgcactatcttcataatctatatacgaagaactctcaagttcaactgcttaattttttgaaaaaataaagaaattcagtaccatcgattgctc |
40353461 |
T |
|
| Q |
219 |
cgctccaaacaattttgtactaagtttatgatcaaacttacattgttcaaccgtatacaatttgtnnnnnnnnnngttatcacaccttggtctatcatta |
318 |
Q |
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| T |
40353462 |
cgctccaaacaattttgtactaagtttatgatcaaacttacattgttcaaccgtatacaatttgtaaaaaaaaaaattatcacaccttggtctatcatta |
40353561 |
T |
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| Q |
319 |
tcttactcaacattatcggataatagatcatatttatgttactcaaattacccataactgtgtccaaaaacagcagtgacaaatttacctttttgatctt |
418 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40353562 |
tcttactcaacattattggataatagatcatatttatgttactcaaattacacataactgtgtccaaaaacagcagtgacaaatttacctttttgttctt |
40353661 |
T |
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| Q |
419 |
tagagtgttgtaaatacaaaagttgtgtaggtttgagactcggtattcatcttggtcacattgtatgaatatcttctagataaagtaataaagaagacca |
518 |
Q |
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| T |
40353662 |
tagagtgttgtaaatacaaaagttgtgtaggtttgagactcggcattcatcttggtcacattgtatgaatatcttcttgataaagtaataaagaagacca |
40353761 |
T |
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| Q |
519 |
tgatttgctttcatctg |
535 |
Q |
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| T |
40353762 |
tgatttgctttcatctg |
40353778 |
T |
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