View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15372_low_1 (Length: 1050)

Name: NF15372_low_1
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15372_low_1
NF15372_low_1
[»] chr8 (7 HSPs)
chr8 (487-1036)||(42125425-42125969)
chr8 (2-438)||(42126019-42126451)
chr8 (1-72)||(13884488-13884559)
chr8 (1-71)||(42126661-42126731)
chr8 (2-79)||(11867960-11868036)
chr8 (1-71)||(13884765-13884835)
chr8 (1-72)||(29714541-29714612)
[»] scaffold0098 (2 HSPs)
scaffold0098 (182-343)||(46075-46236)
scaffold0098 (72-189)||(46307-46423)
[»] chr4 (12 HSPs)
chr4 (72-189)||(40971173-40971289)
chr4 (206-283)||(40970955-40971032)
chr4 (179-250)||(40971033-40971104)
chr4 (1-74)||(55173530-55173603)
chr4 (911-1035)||(14828313-14828446)
chr4 (2-78)||(55173327-55173403)
chr4 (72-178)||(27256836-27256941)
chr4 (1-77)||(39161282-39161358)
chr4 (1-73)||(39161564-39161636)
chr4 (1-73)||(47096798-47096869)
chr4 (1-73)||(47097074-47097146)
chr4 (1-72)||(50509405-50509476)
[»] chr3 (10 HSPs)
chr3 (214-343)||(3738471-3738599)
chr3 (2-72)||(51663528-51663598)
chr3 (860-901)||(10172667-10172708)
chr3 (980-1036)||(348645-348701)
chr3 (1-77)||(40244619-40244695)
chr3 (9-72)||(40244873-40244936)
chr3 (2-70)||(20538212-20538280)
chr3 (2-73)||(46003246-46003317)
chr3 (218-267)||(347105-347153)
chr3 (1-46)||(46003525-46003570)
[»] chr5 (2 HSPs)
chr5 (122-189)||(38935551-38935619)
chr5 (202-268)||(38935715-38935783)
[»] chr6 (8 HSPs)
chr6 (1-73)||(24690353-24690425)
chr6 (1-71)||(2216855-2216925)
chr6 (2-75)||(11644025-11644099)
chr6 (122-189)||(14863175-14863243)
chr6 (202-260)||(14863020-14863080)
chr6 (1-69)||(24690623-24690691)
chr6 (2-75)||(24798900-24798973)
chr6 (2-66)||(11643754-11643818)
[»] chr2 (14 HSPs)
chr2 (2-73)||(44594246-44594318)
chr2 (2-73)||(13559579-13559650)
chr2 (1-72)||(40987656-40987727)
chr2 (1-72)||(2916377-2916448)
chr2 (1-71)||(16973064-16973134)
chr2 (3-72)||(16973343-16973412)
chr2 (1-76)||(38982552-38982627)
chr2 (2-65)||(40987924-40987987)
chr2 (2-69)||(44594516-44594583)
chr2 (1-46)||(24125930-24125975)
chr2 (1-73)||(11533722-11533794)
chr2 (4-71)||(24125670-24125737)
chr2 (1-46)||(2916654-2916699)
chr2 (1-46)||(24126200-24126245)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-72)||(22982-23053)
[»] chr7 (7 HSPs)
chr7 (1-76)||(28715919-28715994)
chr7 (1-72)||(41986185-41986256)
chr7 (2-73)||(28715640-28715711)
chr7 (1-74)||(30862215-30862288)
chr7 (3-72)||(41985909-41985978)
chr7 (6-76)||(6474562-6474632)
chr7 (1-46)||(47373739-47373784)
[»] chr1 (8 HSPs)
chr1 (2-73)||(10824647-10824718)
chr1 (2-73)||(18844726-18844798)
chr1 (1-70)||(15825798-15825865)
chr1 (2-72)||(22683140-22683210)
chr1 (1-75)||(37189625-37189699)
chr1 (2-46)||(18844484-18844528)
chr1 (1-71)||(37189368-37189437)
chr1 (1-73)||(19056428-19056500)
[»] scaffold0781 (1 HSPs)
scaffold0781 (1-71)||(5312-5382)
[»] scaffold0047 (1 HSPs)
scaffold0047 (911-1035)||(25124-25257)
[»] scaffold0005 (1 HSPs)
scaffold0005 (911-1035)||(11263-11396)


Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 487 - 1036
Target Start/End: Complemental strand, 42125969 - 42125425
Alignment:
Q  487 gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaacatacttacgttatcacggagaatatagattagagttggtcggataattac 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||| ||||||||||||    
T  42125969 gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaatatacttatgctatcacggagaatatagattagaattgatcggataattac 42125870  T
Q  587 agatgggacaatccagtctcatcctaatttttcttaacccagatgagacattctatttgtgttnnnnnnnnnnnnnnnngtattttttatattataaaaa 686  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                  |||    ||||||||||||    
T  42125869 agatgggacaatccagtctcatcctaatttttcttaactcagatgagacattctatttgtgttaaataaaaaaataaaaaaatt----atattataaaaa 42125774  T
Q  687 tgccgtattcatagagtatacaattcatggtttaagcggaacttccttnnnnnnnn-tggtttaagcgtaactaattaaaacctagattactaaaatata 785  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||||||||| ||||    
T  42125773 tgccgtattcatagagtatacaattcatggtttaagcggaacttccttaaaaaaaaatggtttaagcggaactaattaaaacctagattactaaa-tata 42125675  T
Q  786 tacatgattataggatatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatcc 885  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125674 tacatgattatag-atatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatcc 42125576  T
Q  886 atataagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgtaagtttactacaaagaatatgttagtaaaaaat 985  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125575 atataagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgtaagtttactacaaagaatatgttagtaaaaaat 42125476  T
Q  986 gtagaaattataccacttatcttgttgacattgctgtactacttgaatatg 1036  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125475 gtagaaattataccacttatcttgttgacattgctgtactacttgaatatg 42125425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 2 - 438
Target Start/End: Complemental strand, 42126451 - 42126019
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaattatttatgtcacactaaataccaa 101  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126451 tacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagcctaaaattatttatgtcacactaaataccaa 42126352  T
Q  102 aactcttccattttataaactttatgaaaagcaaatgatattttagagaaaaccaaaattagcgcacaaaacccttcatagttgagacaattaaatcagc 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126351 aactcttccattttatgaactttatgaaaagcaaatgatattttagagaaaaccaaaattagcgcacaaaacccttcatagttgagacaattaaatcagc 42126252  T
Q  202 tattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattagtttgaacggaggaattttgg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||||||||| ||||||    
T  42126251 tattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaattcacgtgacattagcattaaagattagtttgaacggaggagttttgg 42126152  T
Q  302 tgggatgacacataagaaaattgcaccttaaaatacatgtatgtatgtatgaagaggttttttagagtgccacatgggcacaacctaagcataaggttaa 401  Q
    || ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42126151 tgagatgacacataagaaaattgcaccttaaaatacatgtatg----tatgaagaggttttttagagtgccacataggcacaatctaagcataaggttaa 42126056  T
Q  402 ctcaagtttaaaagtcaacatagtattctaattttaa 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  42126055 ctcaagtttaaaagtcaacatagtattctaattttaa 42126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13884559 - 13884488
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  |||||||||||||||||||||    
T  13884559 gtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42126661 - 42126731
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||| ||  ||||||||||||||||||||    
T  42126661 gtacaaattatagttaggggatcaaattgagataatcaattaagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 11867960 - 11868036
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaatta 79  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||| ||  ||| ||||||||||||||||||||||||    
T  11867960 tacaaattatagttaaggaaccaaattgagacaatcaattaagttaag-gaccaggtgattgaataagcctaaaatta 11868036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13884765 - 13884835
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||||| ||  ||||||||||||||||||||    
T  13884765 gtacaaattatagttaggggactaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29714612 - 29714541
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||| ||||||| ||| |||||||||||| ||| ||||||||| ||  |||||||||||||||||||||    
T  29714612 gtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 182 - 343
Target Start/End: Complemental strand, 46236 - 46075
Alignment:
Q  182 gttgagacaattaaatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattag 281  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| |||     
T  46236 gttgtgacaattaaatcagccattttataattaaagagttatgaaagagtgattaaaagaaaaggagagaaagccacatggcattagtatgaaagtttat 46137  T
Q  282 tttgaacggaggaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtat 343  Q
    || | | || ||| |||||||| | ||| | ||||| ||| || | |||| |||||||||||    
T  46136 ttaggaagggggagttttggtgaggtgatatataagcaaaatgtagcttagaatacatgtat 46075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 46423 - 46307
Alignment:
Q  72 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgata-ttttagagaaaaccaaaattagcgcacaa 170  Q
    ||||| |||||||||||| |||||||| ||||||||| |||| ||| ||||||  ||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  46423 taaaaatatttatgtcacgctaaatactaaaactctttcattgtatgaacttt--gaaaaccaaatgataattttagagaaaacaaaagttagcgcacaa 46326  T
Q  171 aacccttcatagttgagac 189  Q
    |||||||||||||||||||    
T  46325 aacccttcatagttgagac 46307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 40971289 - 40971173
Alignment:
Q  72 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaa 170  Q
    ||||| ||||||||||||||||||||| ||||| ||| |||| ||| ||||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  40971289 taaaaatatttatgtcacactaaatactaaaaccctttcattgtatgaacttt--gaaaaccaaatgatatttttagagaaaacaaaagttagcgcacaa 40971192  T
Q  171 aacccttcatagttgagac 189  Q
    |||||||||||||||||||    
T  40971191 aacccttcatagttgagac 40971173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 40971032 - 40970955
Alignment:
Q  206 ttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattagtt 283  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||    
T  40971032 ttataattgaagagttatgaaagagtgattaaaagaaaaggagagaaagccacatggcattagtatgaaagtttagtt 40970955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 40971104 - 40971033
Alignment:
Q  179 atagttgagacaattaaatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagag 250  Q
    ||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  40971104 atagttgtgacaattaaatcaaccattttataattgaagagttatgaaagagtgattaaaagaaaaggagag 40971033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55173530 - 55173603
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaa 74  Q
    ||||||||||||||||||  | |||||||||| ||| ||||||||| ||  |||||||||||||||||||||||    
T  55173530 gtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctaa 55173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 911 - 1035
Target Start/End: Original strand, 14828313 - 14828446
Alignment:
Q  911 aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac 1001  Q
    |||||||||||| |||| ||||| |||||||||||| |||  |||||||||||||||||        ||||| | |||||||||||||||| |  | |||    
T  14828313 aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac 14828412  T
Q  1002 ttatcttgttgacattgctgtactacttgaatat 1035  Q
    ||||||| |||||||||||| || ||||||||||    
T  14828413 ttatcttattgacattgctgcacaacttgaatat 14828446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 55173403 - 55173327
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaatt 78  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| || |||||| |||| ||||||||| ||||||    
T  55173403 tacaaattatagttaggggaccaaattaagacaatcaattaagttaaggaaccggatgatcgaataagccaaaaatt 55173327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 27256941 - 27256836
Alignment:
Q  72 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaa 170  Q
    ||||| |||||||||||||||| |||  | ||| ||| |||| ||| ||||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  27256941 taaaaatatttatgtcacactagatattataaccctttcattgtatgaacttt--gaaaaccaaatgatatttttagagaaaacaaaagttagcgcacaa 27256844  T
Q  171 aacccttc 178  Q
    || |||||    
T  27256843 aatccttc 27256836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39161358 - 39161282
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaat 77  Q
    ||||||||||||||||||| |||||||| ||| | | ||||||||| |   | ||||||||||||||||||||||||    
T  39161358 gtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaataagcctaaaat 39161282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39161564 - 39161636
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||||||| |||||||| | | ||| ||||||||| || |||||| || |||||||||||||    
T  39161564 gtacaaattatagttaggggaccaaattaaaacaatcaattaagttaaggaaccggatggttgaataagccta 39161636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47096869 - 47096798
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||| ||  | | ||||||||||||||||||    
T  47096869 gtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagccta 47096798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 47097074 - 47097146
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||||| | || ||||||||| ||| ||||||||| ||  | ||| ||||||||||||||||    
T  47097074 gtacaaattatagttagaggactaaattgagacaatcaattaagttaagagatcggatgattgaataagccta 47097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 50509405 - 50509476
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  | | | |||||||||||||||    
T  50509405 gtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatgattgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 3738471 - 3738599
Alignment:
Q  214 aaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattagtttgaacggaggaattttggtgggatgacaca 313  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||| ||| ||| ||  || |||||||| | |||||||    
T  3738471 aaagagttatgaaagagtgattaaaagaaaa-gagagaaagccacatggcattagcatgaaaaattggttagaaagggagagttttggtgaggtgacaca 3738569  T
Q  314 taagaaaattgcaccttaaaatacatgtat 343  Q
    |||| ||| || | || | |||||||||||    
T  3738570 taagcaaagtgtagctcagaatacatgtat 3738599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 51663528 - 51663598
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| |||||||||||||||    
T  51663528 tacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 860 - 901
Target Start/End: Original strand, 10172667 - 10172708
Alignment:
Q  860 aagaattaagaaataaaatcatatccatataagagaataaac 901  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  10172667 aagaattaagaaataacatcatatccatataagagaataaac 10172708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 980 - 1036
Target Start/End: Complemental strand, 348701 - 348645
Alignment:
Q  980 aaaaatgtagaaattataccacttatcttgttgacattgctgtactacttgaatatg 1036  Q
    ||||||||||||| | |||||||||||||||||||||||||| |  |||||||||||    
T  348701 aaaaatgtagaaaatgtaccacttatcttgttgacattgctgcagaacttgaatatg 348645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40244695 - 40244619
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaat 77  Q
    |||||||||||||||| || |||||||||||| ||| ||||||||| ||  | ||| ||||||||||||||| ||||    
T  40244695 gtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggatcggatgattgaataagcctgaaat 40244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  9 tatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||  || ||||||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 20538212 - 20538280
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagc 70  Q
    |||||||||||||||||| | |||||||||| ||| |||||| || |   |||||||||||||||||||    
T  20538212 tacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggaccgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 46003317 - 46003246
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    |||||||||||||||||| |||||||| | | ||| ||||||||| |   ||||||||||||||||| ||||    
T  46003317 tacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggaccgggtgattgaataaaccta 46003246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 347153 - 347105
Alignment:
Q  218 agttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacatta 267  Q
    ||||||||||||||||| |||| |||| |||||||||||||||| |||||    
T  347153 agttatgaaagagtgattaaaataaaa-gagagaaagccacatggcatta 347105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46003525 - 46003570
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagtt 46  Q
    ||||||||| ||||||||| |||||||||||| ||| |||||||||    
T  46003525 gtacaaattttagttaggggaccaaattgagacaatcaattaagtt 46003570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 38935551 - 38935619
Alignment:
Q  122 tttatgaaaagcaaatgatat-tttagagaaaaccaaaattagcgcacaaaacccttcatagttgagac 189  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  38935551 tttatgaaaaccaaatgatatgtttagagaaaaccaaaattagcacacaaaacccttcatagttgagac 38935619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 38935715 - 38935783
Alignment:
Q  202 tattttataattaaa--gagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattag 268  Q
    |||||||||||||||  |||||||||||||||||| ||||||| | || |||||| |||||| ||||||    
T  38935715 tattttataattaaaaagagttatgaaagagtgattaaaagaataagaaagaaagtcacatgtcattag 38935783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24690425 - 24690353
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    |||||||||||||| |||| |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  24690425 gtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2216855 - 2216925
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||    
T  2216855 gtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 11644025 - 11644099
Alignment:
Q  2 tacaaattatagttaggga-accaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaa 75  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||||    
T  11644025 tacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctaaa 11644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 14863243 - 14863175
Alignment:
Q  122 tttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaaaacccttcatagttgagac 189  Q
    |||||||||| ||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||    
T  14863243 tttatgaaaaccaaatgacatttttagataaaaccaaaattagcacacaaaacccttcatagttaagac 14863175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 14863080 - 14863020
Alignment:
Q  202 tattttataatt--aaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacat 260  Q
    ||||||||||||  ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  14863080 tattttataattcaaaagagttatgaaagagtgattaaaagaataagagagaaagccacat 14863020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24690623 - 24690691
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataag 69  Q
    |||||||||||||||||||||||||||| | | ||| ||||||||| ||  | ||||||||||||||||    
T  24690623 gtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 24798900 - 24798973
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaa 75  Q
    |||||||||||||||||| | |||||| ||| ||| |||||| || ||  | ||||||||||||||||||||||    
T  24798900 tacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaataagcctaaa 24798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 11643818 - 11643754
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaat 66  Q
    |||||||||||||||||| | |||||||||| ||| |||||| || ||  |||||||||||||||    
T  11643818 tacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 44594318 - 44594246
Alignment:
Q  2 tacaaattatagttaggga-accaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  44594318 tacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagccta 44594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 13559579 - 13559650
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||| ||  ||||| ||||||||||||||||    
T  13559579 tacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataagccta 13559650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40987727 - 40987656
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| ||  ||||| ||||| |||||||||    
T  40987727 gtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggaccggatgattaaataagcct 40987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 2916448 - 2916377
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||||| | |||||||||| ||| ||||||||| ||  | |||||||||||||||||||    
T  2916448 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16973134 - 16973064
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    ||||||| ||||||||||| |||||||| ||| ||| ||||||||| ||  ||||||||||||||||||||    
T  16973134 gtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 16973343 - 16973412
Alignment:
Q  3 acaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||| ||  |||  ||||||||||||||||    
T  16973343 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38982627 - 38982552
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 76  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||| |   | ||||||||||| |||||| ||||    
T  38982627 gtacaaattatagttagggagccaaattgagacaatcaattaagttaaaggatcgggtgattgattaagccaaaaa 38982552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 40987924 - 40987987
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaa 65  Q
    |||||||||||||||| | | |||||||||| ||||||||||||| ||  ||||||||||||||    
T  40987924 tacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 44594516 - 44594583
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataag 69  Q
    |||||||||||||||||| |||||||||||| ||| |||||| || |   ||||||||||||||||||    
T  44594516 tacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24125930 - 24125975
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagtt 46  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||    
T  24125930 gtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11533722 - 11533794
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||| ||| |||||||||||| ||| | ||||||| ||  ||| | ||||||||||||||||    
T  11533722 gtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgatgattgaataagccta 11533794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  4 caaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    |||||||||||||||| | |||||||||| ||| ||||||||| ||  ||||| ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2916654 - 2916699
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagtt 46  Q
    |||||||| |||||||||| |||||||||||| ||| |||||||||    
T  2916654 gtacaaataatagttaggggaccaaattgagacaatcaattaagtt 2916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24126200 - 24126245
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagtt 46  Q
    ||||||||||||||||||  |||||||||||| ||| |||||||||    
T  24126200 gtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22982 - 23053
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  |||||||||||||||||||||    
T  22982 gtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28715919 - 28715994
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 76  Q
    ||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  ||||||| |||||||||||||||||    
T  28715919 gtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtaattgaataagcctaaaa 28715994  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41986185 - 41986256
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||||| | |||||||||| ||  ||||||||| || ||||||||||||||||||||||    
T  41986185 gtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 28715711 - 28715640
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||||| ||||||||| | | ||||||||||||| ||  ||||||||||||||||| ||||    
T  28715711 tacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaataaaccta 28715640  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30862288 - 30862215
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaa 74  Q
    ||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  ||||  |||||||||||||||||    
T  30862288 gtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatgattgaataagcctaa 30862215  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 41985978 - 41985909
Alignment:
Q  3 acaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    ||||||||||||||||| | |||||||||| ||| ||||||||| ||  || ||||||||||||||||||    
T  41985978 acaaattatagttaggggatcaaattgagacaatcaattaagttaagggactgggtgattgaataagcct 41985909  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 6474562 - 6474632
Alignment:
Q  6 aattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 76  Q
    |||||||||||||  |||||||| ||| ||| ||||||||| ||  | |||||||||||||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagcctaaaa 6474632  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47373739 - 47373784
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagtt 46  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||    
T  47373739 gtacaaattataattaggggaccaaattgagacaatcaattaagtt 47373784  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 10824647 - 10824718
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||||    
T  10824647 tacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagccta 10824718  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 18844726 - 18844798
Alignment:
Q  2 tacaaattatagttaggga-accaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  | ||||||||||||||||||||    
T  18844726 tacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggtgattgaataagccta 18844798  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15825798 - 15825865
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagc 70  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||| ||  |||||||||||||||||||    
T  15825798 gtacaaattatagttagg--accaaattgagacaatcaattaagttaagagaccgggtgattgaataagc 15825865  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 22683210 - 22683140
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 72  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||| |   | |||||||||||||||||||    
T  22683210 tacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcct 22683140  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37189625 - 37189699
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaa 75  Q
    ||||||||||||| ||||| |||||||||||| ||| ||||||||| ||  ||| |||||||||||||| |||||    
T  37189625 gtacaaattatagataggggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataagtctaaa 37189699  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 18844528 - 18844484
Alignment:
Q  2 tacaaattatagttagggaaccaaattgagataattaattaagtt 46  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  18844528 tacaaattatagttaggggaccaaattgagataatcaattaagtt 18844484  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37189437 - 37189368
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    |||||||||||||||| |  |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||    
T  37189437 gtacaaattatagttatgagaccaaattgagacaatcaattaagttaag-gaccgggtgattgaataagcc 37189368  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19056428 - 19056500
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 73  Q
    ||||| ||||||||||||| |||||||| | | ||| ||||||||| ||  ||||| ||||||||||||||||    
T  19056428 gtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaataagccta 19056500  T

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Target: scaffold0781 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5312 - 5382
Alignment:
Q  1 gtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 71  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||    
T  5312 gtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 5382  T

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Target: scaffold0047 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 911 - 1035
Target Start/End: Original strand, 25124 - 25257
Alignment:
Q  911 aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac 1001  Q
    |||||||||||| |||| ||||| |||||||||||| |||  |||||||||||||||||        ||||| | |||||||||||||||| |  | |||    
T  25124 aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac 25223  T
Q  1002 ttatcttgttgacattgctgtactacttgaatat 1035  Q
    ||||||| |||||||||||| || ||||||||||    
T  25224 ttatcttattgacattgctgcacaacttgaatat 25257  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 911 - 1035
Target Start/End: Complemental strand, 11396 - 11263
Alignment:
Q  911 aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac 1001  Q
    |||||||||||| |||| ||||| |||||||||||| |||  |||||||||||||||||        ||||| | |||||||||||||||| |  | |||    
T  11396 aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac 11297  T
Q  1002 ttatcttgttgacattgctgtactacttgaatat 1035  Q
    ||||||| |||||||||||| || ||||||||||    
T  11296 ttatcttattgacattgctgcacaacttgaatat 11263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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