View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_10 (Length: 456)
Name: NF15372_low_10
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 35793938 - 35793516
Alignment:
| Q |
17 |
atgaaatagaataagtgcagaactaatttgtgggtacaattgtacctactcgtatattaagagannnnnnnaatgtaaaagattgatttatagaactaaa |
116 |
Q |
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| T |
35793938 |
atgaaatagaataagtgcagaactaatttgtgggtacaattgtaactaatcgtatattaagagatttttttaatgtaaaagattgatttatagaactaaa |
35793839 |
T |
|
| Q |
117 |
attgattcatannnnnnnnnggtcaggaaaattgattcattttattataagtgttagttaattttataactaactaggatataataaaccgtgcttgttg |
216 |
Q |
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| T |
35793838 |
attgattcatatttttttttggtcaggaaaattgattcattttattataagtgttagttaattttataactaactaggatataataaaccgtgcttgttg |
35793739 |
T |
|
| Q |
217 |
atgaagctgggacagcttagtacaatgcgtgcaagagtatagttagcaaccatcatcatttgttactattatataaatgttggtcaattttttagttatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35793738 |
atgaagctgggacagcttagtacaatgcgtgcaagagtatagttagcaaccatcatcatttgttactattatataaatgttggtcaattttttagttatg |
35793639 |
T |
|
| Q |
317 |
ggaaatttattgaataatccaagagcattgtatttattcgcttctcaaattagagaaagcttattgtatgatgaaaactacattcaaccataccatttaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35793638 |
ggaaatttattgaataatccaagagcattgtatttattcgcttctcaaattagagaaagcttattgtatgatgaaaactacattcaaccataccatttaa |
35793539 |
T |
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| Q |
417 |
cttcatacttatacctttctcaa |
439 |
Q |
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|||||||||| |||||||||||| |
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| T |
35793538 |
cttcatacttctacctttctcaa |
35793516 |
T |
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