View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_11 (Length: 456)
Name: NF15372_low_11
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 33918471 - 33918895
Alignment:
| Q |
18 |
atgctaatgccaagagaaacagctgagatatctacaccatcatgtattgccatgtcaaatgctttgaggatatcagcaccgtccaacaggaacgtcccag |
117 |
Q |
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| T |
33918471 |
atgctaatgccaagagaaacagctgagatatctacaccatcatgtatagccatgtcaaatgctttgaggatatcagcatcgtccaacaggaacgtcccag |
33918570 |
T |
|
| Q |
118 |
caagctttgtagatagccaaatgagctaaggtagctcctcctcttgctaaaccagaagcaagcaagtcctcaataatttgcattttttacaaaatatcca |
217 |
Q |
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| T |
33918571 |
caagctttgtagatagccaaatgagctaaggcagctcctcctcttgctaaaccagaagtaagcaagtcctctataatttgcattttttacaaaatatcca |
33918670 |
T |
|
| Q |
218 |
gctgatgttgaagctgtgtgagatccatggccagtagcatctctggttgagagatattctgaagtgtcggtgtttccgaggatcaaggatgaggttctta |
317 |
Q |
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| T |
33918671 |
gct-atgttgaagctgtgtgagatccatggccagtagcatctctggttgagagatattctgaagtgtcggtgtttc-------caaggatgaggttctta |
33918762 |
T |
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| Q |
318 |
gtgtgatcagtcattccttttaggaagcatctagcaccaattatcttcttgttgcagtttgtggagtagagttgaaattttctctaacttgacaaactcc |
417 |
Q |
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| T |
33918763 |
gtgtgatcagtcattccttttaggaagcatctagcaccaattatcttcttgttgcagtttgtggagtagagttgaaattttctctaacttgacaaactcc |
33918862 |
T |
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| Q |
418 |
tttccactttgatggaatgtttccctttgcttc |
450 |
Q |
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| T |
33918863 |
tttccactttgatggaatttttcccattgcttc |
33918895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 35082943 - 35082519
Alignment:
| Q |
18 |
atgctaatgccaagagaaacagctgagatatctacaccatcatgtattgccatgtcaaatgctttgaggatatcagcacc--------gtccaacaggaa |
109 |
Q |
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|||| ||||||||||||||||| | ||| |||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
35082943 |
atgccaatgccaagagaaacagttaagacatctacaccatcgtgtatagccatgtcaaatgctttgaggatatcagcatcagtacagtgtccaacaggaa |
35082844 |
T |
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| Q |
110 |
cgtcccagcaagctttgtagatagccaaatgagctaaggtagctcctcctcttgctaaaccagaagcaagcaagtcctcaataatttgcattttttacaa |
209 |
Q |
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|||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |
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| T |
35082843 |
cgtcccagcaagctttgtagatagccaagtgagctaaaggtgctcctcctcttgctaaaccagaagcaagg----cctctataatttgcattttctacaa |
35082748 |
T |
|
| Q |
210 |
aatatccagctgatgttgaagctgtgtgagatccatggccagtagcatctctggttgagagatattctgaagtgtcggtgtttccgaggatcaaggatga |
309 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| |||||||||| | |||||||||||||| |||||| |||||| |||||| || |
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| T |
35082747 |
aatatccagctgctgttgaagctgtgtgagttccatggccaatagcatctctagctgagagatattctgtagtgtcattgtttc-------caaggacga |
35082655 |
T |
|
| Q |
310 |
ggttcttagtgtgatcagtcattccttttaggaagcatctagcaccaattatcttcttgttgcagtttgtggagtagagttgaaattttctctaacttga |
409 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||| |
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| T |
35082654 |
ggttcttagtgtgatcagttattccttttaggaaccatctagcaccaattatcttcttgttgcagtttgtg-----gagttaaatttttcaccaacttga |
35082560 |
T |
|
| Q |
410 |
caaactcctttccactttgatggaatgtttccctttgcttc |
450 |
Q |
| |
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|||||||||||||||||||||||||| || ||| ||||||| |
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| T |
35082559 |
caaactcctttccactttgatggaattttccccattgcttc |
35082519 |
T |
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