View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_13 (Length: 359)
Name: NF15372_low_13
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 36979051 - 36978703
Alignment:
| Q |
1 |
tctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaac |
100 |
Q |
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| T |
36979051 |
tctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaac |
36978952 |
T |
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| Q |
101 |
acagggctagttgtgaagctgctttgaaagcgaagaagcaagctgctctgcagaagctcaacatctatcagtccaaagaggaggtgaaacagaagaatgt |
200 |
Q |
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| T |
36978951 |
acagggctagttgtgaagctgctttgaaagcaaagaagcaagctgctctgcagaagctgaacatctatcagtccaaagaggaggtgaaacagaaggatgt |
36978852 |
T |
|
| Q |
201 |
tagcgataagttcaattccaatgttaagagtggagataatattcttaagaaaggattaaagggaacagtagtgatggatgataaggtgcaaaagaaccag |
300 |
Q |
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| T |
36978851 |
tagcaataagttcaattccaatgttaagagtggagataatattcttaagaaaggattaaagggaacagtagtgatggatgataaggtgcaaaagaaccag |
36978752 |
T |
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| Q |
301 |
gctgagcctgttaggacgtataattcgaaatcaatatgtagagtctgtg |
349 |
Q |
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| T |
36978751 |
gctgagcctgttaggacgcataattcaaaatcaatatgtagagtctgtg |
36978703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 36979906 - 36979752
Alignment:
| Q |
2 |
ctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaaca |
101 |
Q |
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| T |
36979906 |
ctacacagaaggaagtgccgaaagagtggacttgtgctttatgtttggtaacaacttcgagccagataaccttgaattctcatattaatgggaggaaaca |
36979807 |
T |
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| Q |
102 |
cagggctagttgtgaagctgctttgaaagcgaagaagcaagctgctctgcagaag |
156 |
Q |
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| T |
36979806 |
cagagctgcttgtgaagcagctttgaaagcaaagaagcaacctgctccgcagaag |
36979752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 36984462 - 36984396
Alignment:
| Q |
73 |
ttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaagcgaagaagc |
139 |
Q |
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| T |
36984462 |
ttgaattcccatcttaatgggaggaaacacagagctgcttgtgaagcagctttgaaagcaaagaagc |
36984396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 37000469 - 37000385
Alignment:
| Q |
49 |
gtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaagcga |
133 |
Q |
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| T |
37000469 |
gtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttgaaagcga |
37000385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36980641 - 36980522
Alignment:
| Q |
1 |
tctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaac |
100 |
Q |
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||||| ||||||||| ||||| ||||||| |||| ||| | || | ||||||||||||| | ||| | ||||| |||||| |||||||| ||||||| |
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| T |
36980641 |
tctacacagaaggaagtgcagagagagtggacttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaac |
36980542 |
T |
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| Q |
101 |
acagggctagttgtgaagct |
120 |
Q |
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| T |
36980541 |
acagggatactagtgaagct |
36980522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 36984401 - 36984318
Alignment:
| Q |
152 |
agaagctcaacatctatcagtccaaagaggaggtgaaacagaagaatgttagcgataagttcaattccaatgttaagagtggag |
235 |
Q |
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| T |
36984401 |
agaagctaaaaatctacaaggccaaagaggaggtgaaacaggagaattttagcaataagttaaattctgatgttgagaatggag |
36984318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36986328 - 36986225
Alignment:
| Q |
1 |
tctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaac |
100 |
Q |
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||||| ||||||||| ||||| |||||||| |||| ||||| || | |||||||||| |||| ||| || |||||||||||| || | ||| | ||||| |
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| T |
36986328 |
tctacacagaaggaagtgcagaaagagtggacttgtgctttatgtttggtaacaacaacgagtgagaaaatcttgaattcccacctgagtggaaagaaac |
36986229 |
T |
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| Q |
101 |
acag |
104 |
Q |
| |
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|||| |
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| T |
36986228 |
acag |
36986225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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