View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_14 (Length: 337)
Name: NF15372_low_14
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 64 - 326
Target Start/End: Complemental strand, 20151053 - 20150791
Alignment:
| Q |
64 |
gactaagctgattgatatatttcaatttacgggattgttatttttcaaacttaaaatactaaattgacaacacttacatatacaatctcttnnnnnnn-c |
162 |
Q |
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| T |
20151053 |
gactaagctgattgatatatttcaatttaagggattgttatttctcaaacttaaaatactaaattgacaacacttacatatacaatctctttaaaaaaac |
20150954 |
T |
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| Q |
163 |
aataaaatttaccgcacatccaacaaatacata--catcaagagattaaaattcatctaaacatctggatggaaacacctgctctcaaaaatttacaaca |
260 |
Q |
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| T |
20150953 |
aataaaatttaccgcacatccaacaaatacatatacatcaagagattaaaattcatctaaacatctggatggaaacacctgctctcaaaaatttacaaca |
20150854 |
T |
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| Q |
261 |
aaagattgaaacaatgttcctatcaacaacgaggatatttcaagttctagttcgtcagaataatct |
326 |
Q |
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| T |
20150853 |
aaagattgaaacaatgttc---tcgacaacaaggatatttcaaggtctagttcgtcgtaataatct |
20150791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20151117 - 20151073
Alignment:
| Q |
1 |
acaaacagaacctttagaattatgaagcaaaattagaaataggat |
45 |
Q |
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| T |
20151117 |
acaaacagaacctttagaattatggtgcaaaattaaaaataagat |
20151073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 12083402 - 12083330
Alignment:
| Q |
242 |
ctctcaaaaatttacaacaaaagattgaaacaatgttcct-atcaacaacgaggatatttcaagttctagttc |
313 |
Q |
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| T |
12083402 |
ctctcaagaaattacaacaaaagattcaaataatgttcctaatctacaacaagtatatttcaaggtctagttc |
12083330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 38818036 - 38817958
Alignment:
| Q |
244 |
ctcaaaaatttacaacaaaagattgaaacaatgttcctatcaacaacgaggatatttcaagttctagttcgtcagaata |
322 |
Q |
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| T |
38818036 |
ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataata |
38817958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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