View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_15 (Length: 324)
Name: NF15372_low_15
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 27874604 - 27874917
Alignment:
| Q |
11 |
atcatcaagaagaagaaagtgatcaagagaaaatgatttcatcaccaatggctgcagggtgtcctggttgtttatcttatgtattgattatgaagaataa |
110 |
Q |
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| T |
27874604 |
atcatcaagacgaagaaagtgatcaagagaaaatgatttcatcaccaatggctgcagggtgtcctggttgcttatcttatgtattgattatgaagaataa |
27874703 |
T |
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| Q |
111 |
tcctaagtgtcctaggtgtaactctatggtacccattccaactatgaaaaaacctaggattgatcttaatatttcaatttaataagtggtttaaggataa |
210 |
Q |
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| T |
27874704 |
tcctaagtgtcctaggtgtaactctattgtacccattccaactatgaaaaaacctaggattgatcttaatatttcaatttaataagtggtttaaggataa |
27874803 |
T |
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| Q |
211 |
ttggtaattatttatttacctacatttttaatataannnnnnnnnctttacaattttgtaaattgaatgatagataaatttagttggtttaagcatagga |
310 |
Q |
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| T |
27874804 |
ttggtaattatttatttacctacatttttaatataatttttttttctttacaattttgtaaattgaatgatagataaatttagttggtttaagcatagga |
27874903 |
T |
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| Q |
311 |
taattttgaagggg |
324 |
Q |
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| T |
27874904 |
taattttgaagggg |
27874917 |
T |
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