View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15372_low_2 (Length: 957)

Name: NF15372_low_2
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15372_low_2
NF15372_low_2
[»] chr2 (14 HSPs)
chr2 (11-494)||(16146280-16146763)
chr2 (11-942)||(16154912-16155853)
chr2 (496-942)||(16146819-16147268)
chr2 (11-491)||(16176633-16177113)
chr2 (496-783)||(7487929-7488213)
chr2 (561-783)||(35172437-35172659)
chr2 (496-783)||(21736404-21736689)
chr2 (641-769)||(14920436-14920564)
chr2 (561-783)||(36598267-36598487)
chr2 (561-620)||(37981686-37981745)
chr2 (496-620)||(15284493-15284616)
chr2 (561-620)||(2288523-2288582)
chr2 (441-490)||(14914082-14914131)
chr2 (115-164)||(16200350-16200399)
[»] chr7 (14 HSPs)
chr7 (491-783)||(12253190-12253480)
chr7 (658-783)||(33474681-33474806)
chr7 (552-616)||(9599030-9599094)
chr7 (552-616)||(9826601-9826665)
chr7 (561-620)||(37042524-37042583)
chr7 (641-767)||(3634347-3634473)
chr7 (496-623)||(33474518-33474644)
chr7 (836-886)||(152236-152286)
chr7 (537-611)||(3634253-3634327)
chr7 (725-767)||(9825243-9825285)
chr7 (725-767)||(10727168-10727210)
chr7 (836-886)||(43057330-43057380)
chr7 (562-620)||(46037311-46037369)
chr7 (678-767)||(42678008-42678097)
[»] chr3 (22 HSPs)
chr3 (495-783)||(23715459-23715748)
chr3 (495-783)||(23733915-23734204)
chr3 (495-783)||(23697004-23697292)
chr3 (646-783)||(85899-86036)
chr3 (658-783)||(23753742-23753867)
chr3 (515-615)||(10216127-10216227)
chr3 (552-620)||(10225630-10225698)
chr3 (552-619)||(10216002-10216069)
chr3 (561-620)||(44042006-44042065)
chr3 (561-620)||(45926906-45926965)
chr3 (561-615)||(10104980-10105034)
chr3 (537-615)||(10225756-10225834)
chr3 (524-697)||(46749278-46749449)
chr3 (552-620)||(10104854-10104922)
chr3 (836-886)||(23697356-23697406)
chr3 (836-886)||(23715812-23715862)
chr3 (836-886)||(23734268-23734318)
chr3 (836-886)||(24150488-24150538)
chr3 (679-772)||(44041854-44041948)
chr3 (561-610)||(10055755-10055804)
chr3 (495-623)||(23752373-23752500)
chr3 (562-620)||(44701609-44701667)
[»] chr8 (10 HSPs)
chr8 (496-783)||(43488906-43489191)
chr8 (664-783)||(42366208-42366327)
chr8 (836-886)||(41965456-41965506)
chr8 (552-620)||(14061601-14061669)
chr8 (838-886)||(41965235-41965283)
chr8 (561-623)||(17790500-17790562)
chr8 (836-886)||(29259930-29259980)
chr8 (836-886)||(40264936-40264986)
chr8 (836-886)||(43605023-43605073)
chr8 (679-760)||(14061727-14061808)
[»] chr4 (13 HSPs)
chr4 (496-783)||(56397443-56397728)
chr4 (646-783)||(42315047-42315184)
chr4 (537-767)||(28100397-28100626)
chr4 (495-620)||(16653253-16653377)
chr4 (499-620)||(28847063-28847183)
chr4 (561-620)||(37370848-37370907)
chr4 (561-620)||(38230836-38230895)
chr4 (496-620)||(47301313-47301432)
chr4 (537-620)||(53271949-53272032)
chr4 (561-614)||(1848494-1848547)
chr4 (561-623)||(20538995-20539058)
chr4 (679-760)||(53272090-53272171)
chr4 (563-620)||(53594152-53594209)
[»] chr5 (10 HSPs)
chr5 (496-783)||(3604253-3604537)
chr5 (552-783)||(378288-378518)
chr5 (552-620)||(26806537-26806605)
chr5 (561-620)||(2276166-2276225)
chr5 (537-767)||(28594256-28594486)
chr5 (561-615)||(26795599-26795653)
chr5 (562-615)||(26806663-26806716)
chr5 (552-620)||(26795473-26795541)
chr5 (715-767)||(27786420-27786472)
chr5 (561-620)||(39753499-39753558)
[»] chr1 (14 HSPs)
chr1 (658-783)||(39758132-39758256)
chr1 (658-783)||(39763486-39763610)
chr1 (494-620)||(43553534-43553659)
chr1 (491-619)||(19007541-19007668)
chr1 (561-620)||(52179652-52179711)
chr1 (552-620)||(27198326-27198394)
chr1 (537-617)||(39758020-39758100)
chr1 (537-617)||(39763374-39763454)
chr1 (561-620)||(14555272-14555331)
chr1 (496-620)||(42657714-42657836)
chr1 (561-620)||(48194654-48194713)
chr1 (561-620)||(48203412-48203471)
chr1 (562-620)||(4288998-4289056)
chr1 (646-788)||(43553683-43553824)
[»] chr6 (5 HSPs)
chr6 (496-620)||(5957126-5957249)
chr6 (571-620)||(4653372-4653421)
chr6 (561-620)||(708979-709038)
chr6 (561-620)||(7100228-7100287)
chr6 (561-620)||(8794343-8794402)
[»] scaffold0287 (2 HSPs)
scaffold0287 (641-767)||(11612-11738)
scaffold0287 (537-611)||(11758-11832)


Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 16146280 - 16146763
Alignment:
Q  11 agcatagggcaattaatacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146280 agcatagggcaattaatacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagag 16146379  T
Q  111 gcgttcgtgttttaggatcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacctggtaactgtggtat 210  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16146380 gcgttcgtgttttaggatcgtcatgttcattctataacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtat 16146479  T
Q  211 tgggatgggaatttgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  16146480 tgggatgggaatttgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttgggaagtgtgttgatgcc 16146579  T
Q  311 cttgatatgagtctttgcctttgttcctatgatcgttgagtttgatcttaaaggaaatagaataagtatgtatgatattcatagctatttcaaatgtatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16146580 cttgatatgagtctttgcctttgttcctatgatcgttgagtttgatcttaaaggaaatacaataagtatgtatgatattcatagctatttcaaatgtatt 16146679  T
Q  411 atcttcatgattttattcaccaattaattgatagaatagttgaccaaccgaatagaatattttgtaataattagttataataag 494  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146680 atcttcatgattttattcatcaattaattgatagaatagttgaccaaccgaatagaatattttgtaataattagttataataag 16146763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 942
Target Start/End: Original strand, 16154912 - 16155853
Alignment:
Q  11 agcatagggcaattaatacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagag 110  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |  ||||||| |    || ||| |  | | || || ||    
T  16154912 agcacagggcaattaatacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaag 16155011  T
Q  111 gcgttcgtgttttaggatcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacc---tggtaactgtgg 207  Q
    | |||  |||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||| | |||  |||||||   |||| | ||||     
T  16155012 gtgttgctgttttaggatcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtga 16155111  T
Q  208 tattgggatgggaatttgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgat 307  Q
    ||||||||||||||||||||||| |||||||| |  ||||||||||||||||| |||||||||| ||||||||||||| |||| ||||   |||||  ||    
T  16155112 tattgggatgggaatttgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaat 16155211  T
Q  308 gcccttgatatgagtctttgcctttgttcctatgatcgttgagtttgatcttaaaggaaatagaataagtatgtatg--atattcatagctatttcaaat 405  Q
    ||| || |||||  | ||||| |||||  ||||  ||||||||||||||||||||||||||| |||||| || ||||  |||||| |||| |||||||||    
T  16155212 gcctttcatatgcttttttgcatttgtaactatcttcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagcgatttcaaat 16155311  T
Q  406 gtattatcttcatgattttattcaccaattaattg----atagaatagttgaccaaccgaatagaatattttgtaataattagttataataa-gtgggtg 500  Q
    ||||| ||||| |||||||||||| ||||||||||    |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  16155312 gtattctcttcgtgattttattcatcaattaattgatatatagaataattgaccaaccgaatagaatattttgtaataattagttataataaggagggtg 16155411  T
Q  501 tattgaatt---gagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaatt 597  Q
    |||||||||    |||| | ||||  |||||||| ||  || |||| ||||||||||| | | ||||||||| || ||||||||||||||||||||||||    
T  16155412 tattgaattaagaagatatcaaag-gattttaatagactttattatgataagatagtcgtgtggtattcaatcaaaacttttataaaatttatataaatt 16155510  T
Q  598 ttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttg 697  Q
    |||||||||||||||||||||||||| ||         |||  ||||||||||||||| ||||| ||||||||||||||||| ||||||||||| | |||    
T  16155511 ttgtggtattcaattaagacaattaagac--tttttttcaaagcaacgaaatccgttggcattcaattgagatttctaagaaattttaaaatgtttcttg 16155608  T
Q  698 ggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaaactcttgggatttt 797  Q
    | |||||| |||||| ||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16155609 gtattgaatattaaatggattttaatgaattcatttatggaattgattgtgtgagactttttaattaaaatacacgcatccaacaaactcttgagatttt 16155708  T
Q  798 gtgatactcttccaattttgnnnnnnnnggtacaatactcttccaaattcttttatgttctaatgtgaaaatggcaggttatatcttttaatggtttcaa 897  Q
    ||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16155709 gtgatactctttcaatttatttatttttggtacaatactcttccaaattcttttatgttctaatgtgaaaatggccggttatatcttttaatggtttcaa 16155808  T
Q  898 atactagaattgattcattgatccattgtttcttttggttgatta 942  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  16155809 atactagaattgattcattgatccattgtttcttttagttgatta 16155853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 496 - 942
Target Start/End: Original strand, 16146819 - 16147268
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||| |||||||||||||||||||||||||    
T  16146819 gggtgtattgaattgagattttaaagaaattttaatggacatttttatgataacatagctttttcgtattcaatcaagacttttataaaatttatataaa 16146918  T
Q  596 ttttgtggtattcaattaagacaattaacacnnnnnnnnn--caagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtct 693  Q
    |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16146919 ttttgtggtattcaattaagacaattaacactttttttttttcaagccaacgaaatccgttgacattcaattgagatttctaagaacttttaaaatgtct 16147018  T
Q  694 gttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaaactcttggga 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16147019 gttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtgtgagactttttaattaaaatacactcatccaacaaactcttggga 16147118  T
Q  794 ttttgtgatactcttccaattttgnnnnnnnnggtacaatactcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt-aatggt 892  Q
    ||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||| ||||||    
T  16147119 ttttgtgatactcttccaattttgttttttttggtacaatactcttccaaaatcttttatgttctaatgtgaaaatgacaagttatatcttttaaatggt 16147218  T
Q  893 ttcaaatactagaattgattcattgatccattgtttcttttggttgatta 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16147219 ttcaaatactagaattgattcattgatccattgtttcttttggttgatta 16147268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 16176633 - 16177113
Alignment:
Q  11 agcatagggcaattaatacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagag 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |    || ||| | || | ||||| ||    
T  16176633 agcacagggcaattaatacaggtagaaggtgaatgcacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaag 16176732  T
Q  111 gcgttcgtgttttaggatcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacctggtaactgtggtat 210  Q
    | |||  |||||||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||| |||||||||| |||  |||    
T  16176733 gtgttgctgttttaggatcatcatgttcatactacaacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattat 16176832  T
Q  211 tgggatgggaatttgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcc 310  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  16176833 tgggatgggaatttgcaatggtgactgtcaagatgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaattgtgtcgatgcc 16176932  T
Q  311 cttgatatgagtctttgcctttgttcctatgatcgttgagtttgatcttaaaggaaatagaataagtatgtatgatattcatagctatttcaaatgtatt 410  Q
     ||| ||||| |||||| ||||||||||||||||||||| |||||||||| |||||||| ||||| | |||||||||||||||||||||||||||| |||    
T  16176933 tttggtatgattctttgtctttgttcctatgatcgttgaatttgatcttagaggaaatacaataaatttgtatgatattcatagctatttcaaatgcatt 16177032  T
Q  411 atcttcatgattttattcaccaattaattgatagaatagttgaccaaccgaatagaatattttgtaataattagttataat 491  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16177033 ctcttcatgattttattcaccaattaattgatagaatagttgaccaaccaaatagaatattttgtaataattagttataat 16177113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 496 - 783
Target Start/End: Complemental strand, 7488213 - 7487929
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    ||||||||||||||||||||| ||| || ||||||| ||  ||||||| | |||| | |||| | ||||| ||| ||||||||||| |||| || |||||    
T  7488213 gggtgtattgaattgagatttcaaataa-ttttaatagacttttttatgaaaagaaaatcttgtggtattgaatcaagacttttatgaaatctaaataaa 7488115  T
Q  596 ttttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgt 695  Q
    | |||||||||||||| ||||||||||| ||          ||| || | |||| |||||  |||| ||| |||||||||||||||| ||||||||||      
T  7488114 tcttgtggtattcaatcaagacaattaagactttttttt--aagacatcaaaattcgttggtattcaattaagatttctaagaacttataaaatgtctcg 7488017  T
Q  696 tgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||| |||||||||||||    
T  7488016 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaataaactcatccaacaa 7487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 561 - 783
Target Start/End: Complemental strand, 35172659 - 35172437
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacatt 660  Q
    ||||| ||| |||||||||||  ||| || |||||| |||||||||||||| ||||||||||| ||         |||| || | ||||||||||  |||    
T  35172659 gtattgaatcaagacttttatggaatctaaataaatcttgtggtattcaatcaagacaattaagactttttttttcaagacatcaaaatccgttggtatt 35172560  T
Q  661 cgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttttta 760  Q
    | ||| |||||| ||||||||| |||||||| |  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| ||||||||||||    
T  35172559 caattaagatttataagaacttataaaatgtttcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttta 35172460  T
Q  761 attaaaatacactcatccaacaa 783  Q
     ||||||||||||| ||||||||    
T  35172459 gttaaaatacactcttccaacaa 35172437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 496 - 783
Target Start/End: Complemental strand, 21736689 - 21736404
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    ||||||||||||||||||||| |||| | ||||||| ||  ||||||| | |||| | ||||   ||||| ||| || |||||||| |||| || |||||    
T  21736689 gggtgtattgaattgagatttcaaagga-ttttaatagacttttttatgaaaagaaaatcttgaggtattgaatcaatacttttatgaaatctaaataaa 21736591  T
Q  596 ttttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgt 695  Q
    | |||| ||||||||| ||||||||| | ||         |||| || | ||||||||||  |||| ||| ||||||||||||| || ||||||||||      
T  21736590 tcttgttgtattcaatcaagacaatttagactttttttt-caagacatcaaaatccgttggtattcaattaagatttctaagaatttataaaatgtctcg 21736492  T
Q  696 tgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||| ||||||| |||||    
T  21736491 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaataaactcatctaacaa 21736404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 641 - 769
Target Start/End: Complemental strand, 14920564 - 14920436
Alignment:
Q  641 caacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaat 740  Q
    |||||||||||||||  |||| ||||||||||||| |||||| |||||||||| |||| ||||||||||| |  ||||||||| ||||||||| ||||||    
T  14920564 caacgaaatccgttggtattcaattgagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatggattcatttgtggaat 14920465  T
Q  741 ggattgtatgagactttttaattaaaata 769  Q
     |||||| |||||||||||| ||||||||    
T  14920464 agattgtgtgagactttttagttaaaata 14920436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 561 - 783
Target Start/End: Complemental strand, 36598487 - 36598267
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacatt 660  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||||||||||| |||| ||| || ||          ||  |||||||||||||||  |||    
T  36598487 gtatttaatcaagacttttataaaatttaaataaatattgtggtattcaatcaagataatcaagacttttttta--aatacaacgaaatccgttggtatt 36598390  T
Q  661 cgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttttta 760  Q
    | ||| ||||||||| |||||| |||||||||| |||| ||||||||||| |  |||||||||  |||||| | || ||| |||||| ||||||||||||    
T  36598389 caattaagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatgaattcatctgtgaaatagattgtgtgagacttttta 36598290  T
Q  761 attaaaatacactcatccaacaa 783  Q
     |||||||| |||||||||||||    
T  36598289 tttaaaataaactcatccaacaa 36598267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 37981686 - 37981745
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| || ||||||||||||| || ||||||||||||||||||||||||||||||    
T  37981686 gtattcaatcaaaacttttataaaatataaataaattttgtggtattcaattaagacaat 37981745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 496 - 620
Target Start/End: Complemental strand, 15284616 - 15284493
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    |||||||||||||||||| || || | | ||| ||  ||| |||||||||||| | |||||  | ||||||||  |||||||||||||||| || | |||    
T  15284616 gggtgtattgaattgagaattcaagggattttaaaaagat-tttttataataaaaaagtctagtggtattcaaccaagacttttataaaatgtaaacaaa 15284518  T
Q  596 ttttgtggtattcaattaagacaat 620  Q
    | |||||||||||||||||||||||    
T  15284517 tcttgtggtattcaattaagacaat 15284493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 2288523 - 2288582
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | |||| |||||||||||||||||||||||    
T  2288523 gtattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaattaagacaat 2288582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 14914082 - 14914131
Alignment:
Q  441 atagaatagttgaccaaccgaatagaatattttgtaataattagttataa 490  Q
    ||||||||||| || || | ||||||||||||||||||||||||| ||||    
T  14914082 atagaatagttaacgaaacaaatagaatattttgtaataattagtcataa 14914131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 16200350 - 16200399
Alignment:
Q  115 tcgtgttttaggatcgtcatgttcatactataacttatgcacttgtactt 164  Q
    |||||||||||||||||||||| ||   || |||||||||||||||||||    
T  16200350 tcgtgttttaggatcgtcatgtgcaatttacaacttatgcacttgtactt 16200399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 491 - 783
Target Start/End: Complemental strand, 12253480 - 12253190
Alignment:
Q  491 taagtgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttat 590  Q
    |||| ||||||||||||||||||||| |||| | ||||||| ||  ||||||| | |||| | |||||  ||||| ||| |||||||||||  ||| ||     
T  12253480 taagggggtgtattgaattgagatttcaaagga-ttttaatagacttttttatgaaaagaaaatctttaggtattgaatcaagacttttatggaatctaa 12253382  T
Q  591 ataaattttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatg 690  Q
    |||||| || ||||||||||| ||||||||||| ||         |||| || | ||||| ||||  |||| ||| |||||||||||||||| |||||||    
T  12253381 ataaatcttatggtattcaatcaagacaattaagactttttttt-caagacatcaaaatctgttggtattcaattaagatttctaagaacttataaaatg 12253283  T
Q  691 tctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    |||  ||| ||||||||||| ||| |||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  12253282 tctcatggtattgaaaattagacgaattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 12253190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 658 - 783
Target Start/End: Original strand, 33474681 - 33474806
Alignment:
Q  658 attcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttt 757  Q
    |||| ||| |||||||||||||||| |||||| |||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||    
T  33474681 attcaattaagatttctaagaacttataaaatatcttgtggtattgaaaattagacggattttaattgattcatttgtgtaatggattgtgtgagacttt 33474780  T
Q  758 ttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||||||||||||||    
T  33474781 ttagttaaaatacactcatccaacaa 33474806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 9599094 - 9599030
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaaga 616  Q
    |||||| | ||||||||| |||| |||||||||||||| |||||| |||| ||||||||||||||    
T  9599094 agtcttgtagtattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaaga 9599030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 9826665 - 9826601
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaaga 616  Q
    |||||| | ||||||||| |||| |||||||||||||| |||||| |||| ||||||||||||||    
T  9826665 agtcttgtagtattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaaga 9826601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 37042583 - 37042524
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||| ||||||||||| || || |||||||||||||||||||| ||||||    
T  37042583 gtattcaatcaagatttttataaaatctaaattaattttgtggtattcaattatgacaat 37042524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 767
Target Start/End: Original strand, 3634347 - 3634473
Alignment:
Q  641 caacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaat 740  Q
    ||||| |||||||||  |||| ||| |||||||| | ||||| |||||||| | |||| ||| |||| | ||  |||||| || ||||| ||||||||||    
T  3634347 caacggaatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaat 3634446  T
Q  741 ggattgtatgagactttttaattaaaa 767  Q
    ||||| |  ||||||||||| ||||||    
T  3634447 ggattttgagagactttttagttaaaa 3634473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 33474518 - 33474644
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    ||||||||||||||||||||| |||| | ||||||| ||| ||||||| |  | | | ||||    |||| ||| |||||||||||  ||| || |||||    
T  33474518 gggtgtattgaattgagatttcaaagga-ttttaatagatttttttatgaacataaaatcttgagttattgaatcaagacttttatggaatctaaataaa 33474616  T
Q  596 ttttgtggtattcaattaagacaattaa 623  Q
    | |||||||||||||| |||||||||||    
T  33474617 tcttgtggtattcaatcaagacaattaa 33474644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 836 - 886
Target Start/End: Original strand, 152236 - 152286
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  152236 tcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 152286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 537 - 611
Target Start/End: Original strand, 3634253 - 3634327
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaat 611  Q
    ||||||| |||| | |||||| |  |||||||| |||||||||||||||| ||  |||||||| |||||||||||    
T  3634253 tttttattataaaaaagtcttgtgatattcaatcaagacttttataaaatataagtaaattttatggtattcaat 3634327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 725 - 767
Target Start/End: Complemental strand, 9825285 - 9825243
Alignment:
Q  725 gattcatttatggaatggattgtatgagactttttaattaaaa 767  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  9825285 gattcttttatagaatggattttatgagactttttaattaaaa 9825243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 725 - 767
Target Start/End: Complemental strand, 10727210 - 10727168
Alignment:
Q  725 gattcatttatggaatggattgtatgagactttttaattaaaa 767  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  10727210 gattcttttatagaatggattttatgagactttttaattaaaa 10727168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 836 - 886
Target Start/End: Complemental strand, 43057380 - 43057330
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  43057380 tcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 43057330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 562 - 620
Target Start/End: Complemental strand, 46037369 - 46037311
Alignment:
Q  562 tattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||||| |||||||||||||||| || | |||| ||||| |||||||| ||||||||    
T  46037369 tattcaatcaagacttttataaaatgtaaacaaatcttgtgatattcaatcaagacaat 46037311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 767
Target Start/End: Complemental strand, 42678097 - 42678008
Alignment:
Q  678 aacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 767  Q
    ||||| |||||||||| |||| ||| |||| |   | ||||||||| ||||| ||| | ||||||||| |||||||||||||| ||||||    
T  42678097 aacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttatgagactttttagttaaaa 42678008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 5e-40; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 495 - 783
Target Start/End: Original strand, 23715459 - 23715748
Alignment:
Q  495 tgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataa 594  Q
    ||||||||||||||||| |||| |||||| ||||||| ||  ||||||| | |||| | ||||    |||| ||| |||||||||||  ||| || ||||    
T  23715459 tgggtgtattgaattgaaatttcaaagaa-ttttaatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatctaaataa 23715557  T
Q  595 attttgtggtattcaattaagacaattaacacnnnnnnnnn--caagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtc 692  Q
    ||  ||||||||||||| ||||||||||| ||           |||| || | |||||||||  ||||| ||| |||||||||||||||| |||||||||    
T  23715558 atcatgtggtattcaatcaagacaattaagactttttttttttcaagacatcaaaatccgtttgcattcaattaagatttctaagaacttataaaatgtc 23715657  T
Q  693 tgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    |  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23715658 tcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 23715748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 495 - 783
Target Start/End: Original strand, 23733915 - 23734204
Alignment:
Q  495 tgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataa 594  Q
    ||||||||||||||||| |||| |||||| ||||||| ||  ||||||| | |||| | ||||    |||| ||| |||||||||||  ||| || ||||    
T  23733915 tgggtgtattgaattgaaatttcaaagaa-ttttaatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatctaaataa 23734013  T
Q  595 attttgtggtattcaattaagacaattaacacnnnnnnnnn--caagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtc 692  Q
    ||  ||||||||||||| ||||||||||| ||           |||| || | |||||||||  ||||| ||| |||||||||||||||| |||||||||    
T  23734014 atcatgtggtattcaatcaagacaattaagactttttttttttcaagacatcaaaatccgtttgcattcaattaagatttctaagaacttataaaatgtc 23734113  T
Q  693 tgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    |  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23734114 tcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 23734204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 495 - 783
Target Start/End: Original strand, 23697004 - 23697292
Alignment:
Q  495 tgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataa 594  Q
    ||||||||||||||||| |||| |||||| ||||||| ||  ||||||| | |||| | ||||    |||| ||| |||||||||||  ||| || ||||    
T  23697004 tgggtgtattgaattgaaatttcaaagaa-ttttaatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatctaaataa 23697102  T
Q  595 attttgtggtattcaattaagacaattaacacnnnnnnnnn-caagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtct 693  Q
    ||  ||||||||||||| ||||||||||| ||          |||| || | |||||||||   |||| ||| |||||||||||||||| ||||||||||    
T  23697103 atcatgtggtattcaatcaagacaattaagacttttttttttcaagacatcaaaatccgtttgtattcaattaagatttctaagaacttataaaatgtct 23697202  T
Q  694 gttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
      ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23697203 cgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 23697292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 646 - 783
Target Start/End: Original strand, 85899 - 86036
Alignment:
Q  646 aaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggatt 745  Q
    ||||||||||  |||| ||| |||||| ||||||||| ||||||||||  ||| ||||||||||| |||||||||| | ||||||||| || ||||||||    
T  85899 aaatccgttggtattcaattaagatttttaagaacttataaaatgtctcgtggtattgaaaattagacggattttactggattcatttgtgtaatggatt 85998  T
Q  746 gtatgagactttttaattaaaatacactcatccaacaa 783  Q
    || |||||||||||| ||||||||||||||||||||||    
T  85999 gtgtgagactttttagttaaaatacactcatccaacaa 86036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 658 - 783
Target Start/End: Original strand, 23753742 - 23753867
Alignment:
Q  658 attcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttt 757  Q
    |||| ||| |||||||||||||||| ||||||||||  ||| ||||||| ||| |||||||||||| ||||||||| || |||| ||||| |||||||||    
T  23753742 attcaattaagatttctaagaacttataaaatgtctcgtggtattgaaagttagacggattttaatggattcatttgtgtaatgaattgtgtgagacttt 23753841  T
Q  758 ttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||||||||||||||    
T  23753842 ttagttaaaatacactcatccaacaa 23753867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 515 - 615
Target Start/End: Complemental strand, 10216227 - 10216127
Alignment:
Q  515 tttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaa 614  Q
    |||||||  |||||||  ||| ||||||| |||| | |||||| | ||||||||| |||||||||||||||| || |||||| |||| ||||||||||||    
T  10216227 tttaaagggattttaaaagatttttttattataaaaaagtcttgtggtattcaatcaagacttttataaaatataaataaatcttgtcgtattcaattaa 10216128  T
Q  615 g 615  Q
    |    
T  10216127 g 10216127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 552 - 620
Target Start/End: Complemental strand, 10225698 - 10225630
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| | ||||||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||    
T  10225698 agtcttgtggtattcaatcaagacttttataaaatataaataaatcttgtagtattcaattaagacaat 10225630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 552 - 619
Target Start/End: Complemental strand, 10216069 - 10216002
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaa 619  Q
    |||||| | ||||||||| || ||||||||||||| || |||||| ||||||||||||||||||||||    
T  10216069 agtcttgtggtattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaa 10216002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 44042065 - 44042006
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||| ||| || |||||| |||||||||||||||||||||||    
T  44042065 gtattcaatcaagacttttatagaatataaataaatcttgtggtattcaattaagacaat 44042006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 45926965 - 45926906
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| ||||||| |||||||| || |||||| |||||||||||||||||||||||    
T  45926965 gtattcaatcaagacttctataaaatataaataaatcttgtggtattcaattaagacaat 45926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 615
Target Start/End: Complemental strand, 10105034 - 10104980
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaag 615  Q
    ||||||||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  10105034 gtattcaatcaagacttttataaaatataaataaatcttgtggtattcaattaag 10104980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 615
Target Start/End: Complemental strand, 10225834 - 10225756
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaag 615  Q
    ||||||| |||| | |||||| |  |||||||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  10225834 tttttattataaaaaagtcttgtgctattcaatcaagacttttataaaatataaataaatcttgtggtattcaattaag 10225756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 697
Target Start/End: Original strand, 46749278 - 46749449
Alignment:
Q  524 attttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaa 623  Q
    |||||||  ||| ||||||| |||| | |||||| | ||| | ||| |||||||||||||||| || |||||| || |||||||||||||||||||| ||    
T  46749278 attttaaaagatttttttattataaaaaagtcttgtggtaatgaatcaagacttttataaaatataaataaatcttatggtattcaattaagacaatcaa 46749377  T
Q  624 cacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttg 697  Q
     |          |||  |||||||||||||||| |||| ||| |||||||| | ||||| ||||||||||||||    
T  46749378 ga--ttttttttcaatgcaacgaaatccgttgatattcaattaagatttctcacaacttataaaatgtctgttg 46749449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 620
Target Start/End: Complemental strand, 10104922 - 10104854
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| | ||||||||| || ||||||||||||| || |||||| |||| ||||||||||||||||||    
T  10104922 agtcttgtggtattcaatcaaaacttttataaaatataaataaatcttgtagtattcaattaagacaat 10104854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 836 - 886
Target Start/End: Original strand, 23697356 - 23697406
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23697356 tcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23697406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 836 - 886
Target Start/End: Original strand, 23715812 - 23715862
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23715812 tcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23715862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 836 - 886
Target Start/End: Original strand, 23734268 - 23734318
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23734268 tcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23734318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 836 - 886
Target Start/End: Complemental strand, 24150538 - 24150488
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  24150538 tcttccaaattcttttctgttctactgtaaaaatggcaggttatatatttt 24150488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 679 - 772
Target Start/End: Complemental strand, 44041948 - 44041854
Alignment:
Q  679 acttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaatt-aaaatacac 772  Q
    |||| |||||||||| |||| |||||||| ||    ||||||||||||||| ||| |||||||||||  ||||||||||||| || |||||||||    
T  44041948 acttataaaatgtctcttggtattgaaaagtatgtagattttaatagattcttttgtggaatggatttcatgagactttttagttgaaaatacac 44041854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 610
Target Start/End: Complemental strand, 10055804 - 10055755
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaa 610  Q
    ||||||||| |||||||||||||||| || |||||| |||||||||||||    
T  10055804 gtattcaatcaagacttttataaaatataaataaatcttgtggtattcaa 10055755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 495 - 623
Target Start/End: Original strand, 23752373 - 23752500
Alignment:
Q  495 tgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataa 594  Q
    |||||||||||||||||||||| |||  | ||||||| ||  ||||||| | |||| | ||||    |||| ||| |||||||||||  |||||| ||||    
T  23752373 tgggtgtattgaattgagatttcaaatta-ttttaatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatttaaataa 23752471  T
Q  595 attttgtggtattcaattaagacaattaa 623  Q
    ||  ||||||||||||| |||||||||||    
T  23752472 atcatgtggtattcaatcaagacaattaa 23752500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 562 - 620
Target Start/End: Original strand, 44701609 - 44701667
Alignment:
Q  562 tattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||||| |||||||||||||||| || | |||| |||||||||||||| || |||||    
T  44701609 tattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaatcaaaacaat 44701667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 496 - 783
Target Start/End: Original strand, 43488906 - 43489191
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    |||||||||||||||| |||| |||| | ||||||| ||  ||||||| | |||| | ||||   ||||| ||| |||||||||||  ||| || |||||    
T  43488906 gggtgtattgaattgaaatttcaaagga-ttttaatagacttttttatgaaaagaaaatcttgaggtattgaatcaagacttttatggaatctaaataaa 43489004  T
Q  596 ttttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgt 695  Q
    | |||| ||||||||| ||||||||||| ||         |||| || | ||||||||||  |||| ||| |||||||||||||||| ||||||||||      
T  43489005 tcttgtagtattcaatcaagacaattaagactttttttt-caagacatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcg 43489103  T
Q  696 tgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||||||||||| |||||    
T  43489104 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatctaacaa 43489191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 664 - 783
Target Start/End: Original strand, 42366208 - 42366327
Alignment:
Q  664 ttgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaatt 763  Q
    |||||||||||| |||||| |||||||||| |||| ||||||||||| || ||||||||| ||||||||| |||||| |||||| |||||||||||| ||    
T  42366208 ttgagatttctaggaacttataaaatgtctcttggtattgaaaattagacagattttaatggattcatttgtggaatagattgtgtgagactttttagtt 42366307  T
Q  764 aaaatacactcatccaacaa 783  Q
    |||||| ||||||| |||||    
T  42366308 aaaatagactcatctaacaa 42366327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 836 - 886
Target Start/End: Complemental strand, 41965506 - 41965456
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  41965506 tcttccaaattcttttctgttctactgtaaaaatggcaggttatatatttt 41965456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 552 - 620
Target Start/End: Original strand, 14061601 - 14061669
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| | ||||||||| |||| ||||||| ||| || |||||| |||||||||||||| ||||||||    
T  14061601 agtcttgtggtattcaatcaagatttttatagaatataaataaatcttgtggtattcaatcaagacaat 14061669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 838 - 886
Target Start/End: Complemental strand, 41965283 - 41965235
Alignment:
Q  838 ttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  41965283 ttccaaattcttttctgttctaatgtaacaatggcaggttatatatttt 41965235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 623
Target Start/End: Original strand, 17790500 - 17790562
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaa 623  Q
    ||||||||| | |||||||||||||| ||   |||| ||||||||||||||||||| ||||||    
T  17790500 gtattcaatcatgacttttataaaatataacaaaatcttgtggtattcaattaagataattaa 17790562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 836 - 886
Target Start/End: Complemental strand, 29259980 - 29259930
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  29259980 tcttccaaattcttttctgttctattgtaacaatggcaggttatatatttt 29259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 836 - 886
Target Start/End: Complemental strand, 40264986 - 40264936
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  40264986 tcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 40264936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 836 - 886
Target Start/End: Complemental strand, 43605073 - 43605023
Alignment:
Q  836 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 886  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  43605073 tcttccaaattcttttttgttctactgtaacaatggcaggttatatatttt 43605023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 760
Target Start/End: Original strand, 14061727 - 14061808
Alignment:
Q  679 acttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttttta 760  Q
    |||| ||||||||||||||| ||| |||| || ||  |||||||| ||||| ||||| || |||||| | ||||||||||||    
T  14061727 acttataaaatgtctgttggtattcaaaagtatacaaattttaatggattcttttatagagtggattttgtgagacttttta 14061808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 496 - 783
Target Start/End: Original strand, 56397443 - 56397728
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    ||||||||||||||||||||| |||| | ||||||| ||  ||||||| | |||| | ||||   ||||| | | |||||||||||  ||| || |||||    
T  56397443 gggtgtattgaattgagatttcaaagga-ttttaatagacttttttatgaaaagaaaatcttgaggtattgattcaagacttttatggaatctaaataaa 56397541  T
Q  596 ttttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgt 695  Q
    |||||||||||||||| || |||| ||| ||         |||| || | ||||||||||  |||| ||| |||||||||||||||| ||| ||||||      
T  56397542 ttttgtggtattcaatcaaaacaactaagactttttttt-caagacatcaaaatccgttggtattcaattaagatttctaagaacttataacatgtctcg 56397640  T
Q  696 tgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  56397641 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 56397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 646 - 783
Target Start/End: Original strand, 42315047 - 42315184
Alignment:
Q  646 aaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggatt 745  Q
    ||||||||||  |||| ||| |||||||||| ||||| ||||||||||  ||| ||||||||||| |||||||| ||| ||||||||| || ||||||||    
T  42315047 aaatccgttggtattcaattaagatttctaaaaacttataaaatgtctcgtggtattgaaaattagacggatttcaatggattcatttgtgtaatggatt 42315146  T
Q  746 gtatgagactttttaattaaaatacactcatccaacaa 783  Q
    || |||||||||||| ||||||||||||||||||||||    
T  42315147 gtgtgagactttttagttaaaatacactcatccaacaa 42315184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 537 - 767
Target Start/End: Complemental strand, 28100626 - 28100397
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaacacnnnnnnnnnc 636  Q
    ||||||| |||| | |||||| | ||||||||| |||||||||||||||| || |||||| || ||||||||||| |||||||| || ||         |    
T  28100626 tttttattataaaaaagtcttgtggtattcaatcaagacttttataaaatataaataaatcttatggtattcaatcaagacaatcaagacttttttta-c 28100528  T
Q  637 aagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatg 736  Q
    ||   ||||||||||||||| |||| ||| |||||||| | ||||| |||||||||| || | ||| |||| | ||  |||||| || ||||| ||||||    
T  28100527 aatgtaacgaaatccgttgatattcaattaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagattttgatggattcttttatg 28100428  T
Q  737 gaatggattgtatgagactttttaattaaaa 767  Q
    ||||||||| |  ||||||||||| ||||||    
T  28100427 gaatggattttgagagactttttagttaaaa 28100397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 620
Target Start/End: Original strand, 16653253 - 16653377
Alignment:
Q  495 tgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataa 594  Q
    |||||||||||||||| ||||| |  ||| ||||||  || ||||| | || || | |||||| | ||||||||| |||| ||||||||||| || ||||    
T  16653253 tgggtgtattgaattgggatttcatggaa-ttttaaaagacattttaaaaaaaaaaaagtcttgtggtattcaatcaagaattttataaaatatacataa 16653351  T
Q  595 attttgtggtattcaattaagacaat 620  Q
    ||||||| ||||||||||||||||||    
T  16653352 attttgttgtattcaattaagacaat 16653377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 620
Target Start/End: Complemental strand, 28847183 - 28847063
Alignment:
Q  499 tgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattt 598  Q
    ||||||| ||||||||||||||| | ||||||  ||  |||||||||||| | |||||  | ||||||||| || |||||||| ||||  | |||||| |    
T  28847183 tgtattggattgagattttaaagga-ttttaaaagacttttttataataaaaaagtctagtggtattcaatcaaaacttttatgaaatgaaaataaatct 28847085  T
Q  599 tgtggtattcaattaagacaat 620  Q
    ||||||||||||||||||||||    
T  28847084 tgtggtattcaattaagacaat 28847063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 37370907 - 37370848
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| || ||||||||||||| || |||||| |||||||||||||||||||||||    
T  37370907 gtattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaat 37370848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 38230836 - 38230895
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| ||||||||||||||||||| | |||| |||||||||||||| ||||||||    
T  38230836 gtattcaatcaagacttttataaaatttaaacaaatcttgtggtattcaatcaagacaat 38230895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 496 - 620
Target Start/End: Original strand, 47301313 - 47301432
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    |||||||||||||||||||||||  | |||||||   ||  |||| | ||||| |||||||| | |||||||||||||| ||||||| | |    |||||    
T  47301313 gggtgtattgaattgagattttat-gtaattttataagactttttaaaaataaaatagtcttgtggtattcaattaagatttttatagagt----ataaa 47301407  T
Q  596 ttttgtggtattcaattaagacaat 620  Q
    |||||||||||||||||||||||||    
T  47301408 ttttgtggtattcaattaagacaat 47301432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 537 - 620
Target Start/End: Original strand, 53271949 - 53272032
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| ||||| | |||||| |  |||||||| |||||||||||| ||| || |||||| |||||||||||||| ||||||||    
T  53271949 tttttaaaataaaaaagtcttgtgatattcaatcaagacttttatataatataaataaatattgtggtattcaatcaagacaat 53272032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 614
Target Start/End: Complemental strand, 1848547 - 1848494
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaa 614  Q
    ||||| ||| |||||||||||||||| || |||||| |||||||||||||||||    
T  1848547 gtatttaatcaagacttttataaaatataaataaatcttgtggtattcaattaa 1848494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 623
Target Start/End: Original strand, 20538995 - 20539058
Alignment:
Q  561 gtattcaattaagactttt-ataaaatttatataaattttgtggtattcaattaagacaattaa 623  Q
    ||||||||| ||||||||| | ||||| || |||||| |||||||||||||| |||||||||||    
T  20538995 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaattaa 20539058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 760
Target Start/End: Original strand, 53272090 - 53272171
Alignment:
Q  679 acttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttttta 760  Q
    |||| |||||||||| |||| ||| |||| || ||  |||||||| ||||| |||||||| |||||| | ||||||||||||    
T  53272090 acttataaaatgtctattggtattcaaaagtatacatattttaatggattcttttatggagtggattttgtgagacttttta 53272171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 620
Target Start/End: Original strand, 53594152 - 53594209
Alignment:
Q  563 attcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||| || | ||||||||||| || |||||| ||||||||||||||||| |||||    
T  53594152 attcaatcaaaaattttataaaatataaataaatcttgtggtattcaattaaaacaat 53594209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 7e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 496 - 783
Target Start/End: Complemental strand, 3604537 - 3604253
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    ||||||||||||||||||||| |||  | ||||||| ||  || |||| | |||| | ||||   ||||| ||| || |||||||| |||| || |||||    
T  3604537 gggtgtattgaattgagatttcaaatga-ttttaatagactttcttatgaaaagaaaatcttgaggtattgaatcaaaacttttatgaaatctaaataaa 3604439  T
Q  596 ttttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgt 695  Q
    | |||||||||||||| ||||||||||| ||         |||| || | ||||||||||  |||| ||| |||||| ||||||||| ||||||||||      
T  3604438 tcttgtggtattcaatcaagacaattaagactttttatt-caagacatcaaaatccgttggtattcaattaagatttttaagaacttataaaatgtctcg 3604340  T
Q  696 tgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 783  Q
    ||| ||||||||||| || ||||||||| |||||||||  | |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  3604339 tggtattgaaaattagacagattttaatggattcatttgcgtaatggattgtgtgagac-ttttagttaaaatacactcatccaacaa 3604253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 552 - 783
Target Start/End: Original strand, 378288 - 378518
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaacacnnnnnnnnncaagccaacgaaatcc 651  Q
    |||||| | ||||||||| ||||||| |||||||| || |||||| |||| ||||||||| || ||||| || ||         |||| |||||||||      
T  378288 agtcttgtggtattcaatcaagacttctataaaatctaaataaatcttgtagtattcaatcaaaacaatcaagactttttttt-caagacaacgaaatat 378386  T
Q  652 gttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatga 751  Q
    ||||  |||| |||||||||||||||||||| |||||||||| | |   |||||||||  |  ||||||||| ||||| | ||||||||||||||| |||    
T  378387 gttggtattcaattgagatttctaagaacttataaaatgtctctcgatgttgaaaatttgatagattttaatggattcttctatggaatggattgtgtga 378486  T
Q  752 gactttttaattaaaatacactcatccaacaa 783  Q
     |||||||| || ||||| |||||||||||||    
T  378487 aactttttagttgaaatatactcatccaacaa 378518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 552 - 620
Target Start/End: Complemental strand, 26806605 - 26806537
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| | ||||||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||    
T  26806605 agtcttgtggtattcaatcaagacttttataaaatataaataaatcttgtagtattcaattaagacaat 26806537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 2276225 - 2276166
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || |||||| ||||||||||||||||| |||||    
T  2276225 gtattcaatcaagacttttataaaatgtaaataaatcttgtggtattcaattaaaacaat 2276166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 537 - 767
Target Start/End: Complemental strand, 28594486 - 28594256
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaattaacacnnnnnnnnnc 636  Q
    ||||||| |||| | |||||| | ||||||||| |||| ||||||||||  || |||||| |||||||||| |||||||||||| |  ||         |    
T  28594486 tttttattataaaaaagtcttgtggtattcaatcaagatttttataaaacataaataaatcttgtggtatttaattaagacaatcatgactttttttttc 28594387  T
Q  637 aagccaacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatg 736  Q
    ||  |||||||||||||||  |||| |||  ||||||| | ||||| |||||||||| | || ||| |||| |  |  ||||||||| ||||| |||||     
T  28594386 aatacaacgaaatccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttaatggattcttttata 28594287  T
Q  737 gaatggattgtatgagactttttaattaaaa 767  Q
     |||||||| | |||||||||||| ||||||    
T  28594286 taatggattttgtgagactttttagttaaaa 28594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 615
Target Start/End: Complemental strand, 26795653 - 26795599
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaag 615  Q
    ||||||||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  26795653 gtattcaatcaagacttttataaaatataaataaatcttgtggtattcaattaag 26795599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 562 - 615
Target Start/End: Complemental strand, 26806716 - 26806663
Alignment:
Q  562 tattcaattaagacttttataaaatttatataaattttgtggtattcaattaag 615  Q
    |||||||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  26806716 tattcaatcaagacttttataaaatataaataaatcttgtggtattcaattaag 26806663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 620
Target Start/End: Complemental strand, 26795541 - 26795473
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| | ||||||||| || ||||||||||||| || |||||| |||| ||||||||||||||||||    
T  26795541 agtcttgtggtattcaatcaaaacttttataaaatataaataaatcttgtagtattcaattaagacaat 26795473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 715 - 767
Target Start/End: Original strand, 27786420 - 27786472
Alignment:
Q  715 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 767  Q
    ||||||||| ||||| ||||||||||||||| | |||||||||||| ||||||    
T  27786420 gattttaatggattcttttatggaatggattttgtgagactttttagttaaaa 27786472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 39753499 - 39753558
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | |||| ||||| |||||||| ||||||||    
T  39753499 gtattcaatcaagacttttataaaatataaaaaaatcttgtgatattcaatcaagacaat 39753558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 658 - 783
Target Start/End: Original strand, 39758132 - 39758256
Alignment:
Q  658 attcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttt 757  Q
    |||| ||| |||||||||||||||| |||||||||| |||| ||||||||| |  | ||||||||| |||||||||  |||||||||||| |||||||||    
T  39758132 attcaattaagatttctaagaacttataaaatgtcttttggtattgaaaat-atgcagattttaatggattcatttggggaatggattgtgtgagacttt 39758230  T
Q  758 ttaattaaaatacactcatccaacaa 783  Q
    ||| || |||||||||||||||||||    
T  39758231 ttagttgaaatacactcatccaacaa 39758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 658 - 783
Target Start/End: Original strand, 39763486 - 39763610
Alignment:
Q  658 attcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttt 757  Q
    |||| ||| |||||||||||||||| |||||||||| |||| ||||||||| |  | ||||||||| |||||||||  |||||||||||| |||||||||    
T  39763486 attcaattaagatttctaagaacttataaaatgtcttttggtattgaaaat-atgcagattttaatggattcatttggggaatggattgtgtgagacttt 39763584  T
Q  758 ttaattaaaatacactcatccaacaa 783  Q
    ||| || |||||||||||||||||||    
T  39763585 ttagttgaaatacactcatccaacaa 39763610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 494 - 620
Target Start/End: Original strand, 43553534 - 43553659
Alignment:
Q  494 gtgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatata 593  Q
    |||||||||||||||| |||||| || || |||||||| || ||||| ||||||| | |||||| | |||| |||||||||||||||||||||||| |||    
T  43553534 gtgggtgtattgaattaagatttcaa-gagattttaatagacattttcataataaaaaagtcttgtggtatacaattaagacttttataaaatttaaata 43553632  T
Q  594 aattttgtggtattcaattaagacaat 620  Q
    ||| |||| ||||||||||| ||||||    
T  43553633 aatcttgttgtattcaattacgacaat 43553659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 491 - 619
Target Start/End: Complemental strand, 19007668 - 19007541
Alignment:
Q  491 taagtgggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttat 590  Q
    |||||||||||||||||||||||||| || | | ||||||  ||  |||||||||| | | |||||  | ||||||||| |||||||||||||||| ||     
T  19007668 taagtgggtgtattgaattgagatttcaaggga-ttttaaaagacttttttataatgaaaaagtctagtggtattcaatcaagacttttataaaatgtaa 19007570  T
Q  591 ataaattttgtggtattcaattaagacaa 619  Q
    | |||| |||||||||||||| |||||||    
T  19007569 acaaatcttgtggtattcaatcaagacaa 19007541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 52179711 - 52179652
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || |||||| |||||||||||||||||||||||    
T  52179711 gtattcaataaagacttttataaaatataaataaatcttgtggtattcaattaagacaat 52179652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 552 - 620
Target Start/End: Original strand, 27198326 - 27198394
Alignment:
Q  552 agtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||| | ||||||||| || ||||||||||||| || |||||| |||||||||||||||||||||||    
T  27198326 agtcttgtggtattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaat 27198394  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 537 - 617
Target Start/End: Original strand, 39758020 - 39758100
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagac 617  Q
    ||||||| |||| | | |||| ||||||| ||| ||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  39758020 tttttatgataaaaaaatcttgtcgtattgaatcaagacttttattaaatctatataaatcttgtggtattcaattaagac 39758100  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 537 - 617
Target Start/End: Original strand, 39763374 - 39763454
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagac 617  Q
    ||||||| |||| | | |||| ||||||| ||| ||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  39763374 tttttatgataaaaaaatcttgtcgtattgaatcaagacttttattaaatctatataaatcttgtggtattcaattaagac 39763454  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 14555331 - 14555272
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | ||| ||||||||||||||||||||||||    
T  14555331 gtattcaatcaagacttttataaaatataaaaaaaatttgtggtattcaattaagacaat 14555272  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 620
Target Start/End: Original strand, 42657714 - 42657836
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    |||||||||| |||||||||| || || |||||||  ||  |||| || |||| | |||||| | ||||||||| |||||||| ||||||| || ||||     
T  42657714 gggtgtattggattgagatttcaa-gagattttaaaagactttttaattataaaaaagtcttgtggtattcaatcaagactttcataaaatataaataa- 42657811  T
Q  596 ttttgtggtattcaattaagacaat 620  Q
    | |||||||||||||||||||||||    
T  42657812 tcttgtggtattcaattaagacaat 42657836  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 48194654 - 48194713
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | |||| |||||||||||||| ||||||||    
T  48194654 gtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaat 48194713  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 48203412 - 48203471
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | |||| |||||||||||||| ||||||||    
T  48203412 gtattcaatcaagacttttataaaatataaacaaatcttgtggtattcaatcaagacaat 48203471  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 562 - 620
Target Start/End: Original strand, 4288998 - 4289056
Alignment:
Q  562 tattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||||| |||||||||||| ||| || ||||||  ||||||||||||| ||||||||    
T  4288998 tattcaatcaagacttttatagaatataaataaatcatgtggtattcaatcaagacaat 4289056  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 646 - 788
Target Start/End: Original strand, 43553683 - 43553824
Alignment:
Q  646 aaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggatt 745  Q
    |||||||||  ||||| |||||||||||| | ||||| |||| ||||| |||| ||| |||| || |   ||||||||| |||| ||  || ||||||||    
T  43553683 aaatccgttagcattcaattgagatttctcacaacttataaattgtctcttggtattaaaaaatacataaattttaataaattctttggtgaaatggatt 43553782  T
Q  746 gtatgagactttttaattaaaatacactcatccaacaaactct 788  Q
     | ||| | |||||| |||||||||| ||||||||||| ||||    
T  43553783 ttttga-aatttttagttaaaatacattcatccaacaatctct 43553824  T

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Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 496 - 620
Target Start/End: Original strand, 5957126 - 5957249
Alignment:
Q  496 gggtgtattgaattgagattttaaagaaattttaatggatatttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaa 595  Q
    |||||||||||||||||| || || | | ||||||  ||  |||||||||||| | |||||  | ||||||||| |||||||||||||||| || | |||    
T  5957126 gggtgtattgaattgagaattcaaggga-ttttaaaagacttttttataataaaaaagtctagtggtattcaatcaagacttttataaaatgtaaacaaa 5957224  T
Q  596 ttttgtggtattcaattaagacaat 620  Q
    | |||||||||||||||||||||||    
T  5957225 tcttgtggtattcaattaagacaat 5957249  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 4653372 - 4653421
Alignment:
Q  571 aagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||    
T  4653372 aagacttttataaaatgtaaataaatcttgtggtattcaattaagacaat 4653421  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 708979 - 709038
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| || ||||||||||||| || |||||| |||||||||||||| ||||||||    
T  708979 gtattcaatcaaaacttttataaaatgtaaataaatcttgtggtattcaatcaagacaat 709038  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 7100228 - 7100287
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | |||| |||||||||||||| ||||||||    
T  7100228 gtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaat 7100287  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Complemental strand, 8794402 - 8794343
Alignment:
Q  561 gtattcaattaagacttttataaaatttatataaattttgtggtattcaattaagacaat 620  Q
    ||||||||| |||||||||||||||| || | |||| |||||||||||||| ||||||||    
T  8794402 gtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaat 8794343  T

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Target: scaffold0287 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 767
Target Start/End: Complemental strand, 11738 - 11612
Alignment:
Q  641 caacgaaatccgttgacattcgattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaat 740  Q
    ||||| |||||||||  |||| ||| |||||||| | ||||| |||||||| | |||| ||| |||| | ||  |||||| || ||||| ||||||||||    
T  11738 caacggaatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaat 11639  T
Q  741 ggattgtatgagactttttaattaaaa 767  Q
    ||||| |  ||||||||||| ||||||    
T  11638 ggattttgagagactttttagttaaaa 11612  T

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Target: scaffold0287; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 537 - 611
Target Start/End: Complemental strand, 11832 - 11758
Alignment:
Q  537 tttttataataagatagtcttttcgtattcaattaagacttttataaaatttatataaattttgtggtattcaat 611  Q
    ||||||| |||| | |||||| |  |||||||| |||||||||||||||| ||  |||||||| |||||||||||    
T  11832 tttttattataaaaaagtcttgtgatattcaatcaagacttttataaaatataagtaaattttatggtattcaat 11758  T

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