View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15372_low_21 (Length: 229)

Name: NF15372_low_21
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15372_low_21
NF15372_low_21
[»] chr6 (3 HSPs)
chr6 (16-229)||(33040014-33040227)
chr6 (151-228)||(33041144-33041221)
chr6 (97-143)||(9620684-9620730)
[»] chr4 (2 HSPs)
chr4 (16-74)||(22057463-22057521)
chr4 (97-141)||(18524960-18525003)
[»] chr2 (2 HSPs)
chr2 (97-143)||(4104829-4104875)
chr2 (99-143)||(34257110-34257154)
[»] chr3 (1 HSPs)
chr3 (24-76)||(31016230-31016283)
[»] chr8 (1 HSPs)
chr8 (86-122)||(22845882-22845918)
[»] chr7 (1 HSPs)
chr7 (97-141)||(338236-338280)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 33040227 - 33040014
Alignment:
Q  16 atatgttcatatagatagagtcaaaagatcacattttcctaaggatagagagcaaaattgtaannnnnnngttagaggggtaaaatcacaactttttaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||    
T  33040227 atatgttcatatagatagagtcaaaagatcacattttcctaaggatagagggcaaaattgttatttttttgttagaggggtaaaatcacaactttttaaa 33040128  T
Q  116 ggttaaggagtcaaaaatgcatttaagcatttgatctatcattctcccttcaatttagtgcataaactttttaatataataaatagtccccgaataatat 215  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33040127 ggttagggagtcaaaaatgcatttaagcatttaatctatcattctcccttcaatttagtgcataaactttttaatataataaatagtccccgaataatat 33040028  T
Q  216 gaaattctgaaatt 229  Q
    ||||||||||||||    
T  33040027 gaaattctgaaatt 33040014  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 33041221 - 33041144
Alignment:
Q  151 ctatcattctcccttcaatttagtgcataaactttttaa-tataataaatagtccccgaataatatgaaattctgaaat 228  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||    
T  33041221 ctatcattctcc-ttcaatttggtgcataaactttttaaatataataagtagtccccaaatgatatgaaattctgaaat 33041144  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 9620684 - 9620730
Alignment:
Q  97 aaaatcacaactttttaaaggttaaggagtcaaaaatgcatttaagc 143  Q
    ||||||| |||||||||||||||||||||||| |||||  |||||||    
T  9620684 aaaatcataactttttaaaggttaaggagtcacaaatgtctttaagc 9620730  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 22057463 - 22057521
Alignment:
Q  16 atatgttcatatagatagagtcaaaagatcacattttcctaaggatagagagcaaaatt 74  Q
    |||| |||||||| |||||||||||||| ||||||| | ||||||| ||| ||||||||    
T  22057463 atattttcatatatatagagtcaaaagaacacatttccttaaggatcgagcgcaaaatt 22057521  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 18525003 - 18524960
Alignment:
Q  97 aaaatcacaactttttaaaggttaaggagtcaaaaatgcatttaa 141  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||    
T  18525003 aaaatcacaactttttaaaagttaagg-gttaaaaatgcatttaa 18524960  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 4104875 - 4104829
Alignment:
Q  97 aaaatcacaactttttaaaggttaaggagtcaaaaatgcatttaagc 143  Q
    |||||||||| |||||||| ||||||| |||||||||||| ||||||    
T  4104875 aaaatcacaattttttaaaagttaaggtgtcaaaaatgcacttaagc 4104829  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 34257154 - 34257110
Alignment:
Q  99 aatcacaactttttaaaggttaaggagtcaaaaatgcatttaagc 143  Q
    |||| |||||||||||| ||||||| || ||||||||||||||||    
T  34257154 aatcgcaactttttaaaagttaaggggttaaaaatgcatttaagc 34257110  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 31016283 - 31016230
Alignment:
Q  24 atatagatagagtcaaaagatc-acattttcctaaggatagagagcaaaattgt 76  Q
    ||||||||||||||||||||   |||||||| ||| ||||||||||||||||||    
T  31016283 atatagatagagtcaaaagaaagacattttcttaaagatagagagcaaaattgt 31016230  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 22845882 - 22845918
Alignment:
Q  86 gttagaggggtaaaatcacaactttttaaaggttaag 122  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  22845882 gttagaggagtaaaatcacaactttttaaaagttaag 22845918  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 338280 - 338236
Alignment:
Q  97 aaaatcacaactttttaaaggttaaggagtcaaaaatgcatttaa 141  Q
    |||||| |||||||||||| |||||||||||||||| || |||||    
T  338280 aaaatcccaactttttaaaagttaaggagtcaaaaacgcctttaa 338236  T

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