View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_24 (Length: 203)
Name: NF15372_low_24
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 7140403 - 7140575
Alignment:
| Q |
13 |
aagaatattacctctcattggtaacttacatcaactagcatttgcaggaaaacttccacatcatggtctccaaaaactttctcaaaaatatggaccttta |
112 |
Q |
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| T |
7140403 |
aagaaaattacctctcattggtaacttacatcaactagcatttgcaggaaaacttccacatcatgggcttcaaaaactttctcaaaaatatggaccatta |
7140502 |
T |
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| Q |
113 |
atgcacctaaaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaa |
185 |
Q |
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| T |
7140503 |
atgcacctacaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaa |
7140575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 7152282 - 7152357
Alignment:
| Q |
61 |
aaaacttccacatcatggtctccaaaaactttctcaaaaatatggacctttaatgcacctaaaactaggtgaaatt |
136 |
Q |
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| T |
7152282 |
aaaacgtccacatcatgctctacatgaactttctcataaatatggacctttaatgcacatacaacttggtgaaatt |
7152357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 31185565 - 31185532
Alignment:
| Q |
96 |
aaaaatatggacctttaatgcacctaaaactagg |
129 |
Q |
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| T |
31185565 |
aaaaatatggacccttaatgcacctaaaactagg |
31185532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 12426857 - 12426820
Alignment:
| Q |
35 |
aacttacatcaactagcatttgcaggaaaacttccaca |
72 |
Q |
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| T |
12426857 |
aacttgcatcaactagcattagcaggaaaacttccaca |
12426820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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