View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_5 (Length: 566)
Name: NF15372_low_5
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 550
Target Start/End: Original strand, 49128563 - 49129095
Alignment:
| Q |
16 |
atttattccaataaaaactttctatccacggagaagtacttacataactcctcctctatggatcacacatgcatttattttcgcccgcacagtttggtcc |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49128563 |
atttcttccaataaaaactttctatccacggagaagtacttacataactcctc---tatggatcacacgtgcatttattttcgcccgcacagtttggtcc |
49128659 |
T |
|
| Q |
116 |
acttgcaaagtcata---gtaaatgaagttgaagcaccggaaatactgaaagttttgcaaatatctcactcaaagagtattccgcatgttattatagaaa |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49128660 |
acttgcaaagtcataatagtaaatgaagttgaagcaccggaaatactgaaagctttgcaaatatctcactcaaagagtattccgcatgttattatagaaa |
49128759 |
T |
|
| Q |
213 |
gtgacaaaaatctgttgtagaagctatcaactcttcctccaacacgacaaatgaattgggagggataatgtccaaataccgctctatattttagttgaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49128760 |
gtgacaaaaatctgttgtagaagctatcaactcttcctccaacacgacaaatgaattgggagggataatgtccaaataccgctctatattttagttgaaa |
49128859 |
T |
|
| Q |
313 |
atcactacacagttgtatctgtccggagagacaagtcaacaaggttctccctactagtttcttggaaacacctacttgagaatgcgatcaaactcaatgt |
412 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
49128860 |
atcactacacagttgtatctatccg--gagacaagtcaacaaggttctcccgactagtttcttgaaaacacctacttgagaatgcgatcaaactaaatgt |
49128957 |
T |
|
| Q |
413 |
ggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggggttggatttttggctttttccaaagtttgtga |
512 |
Q |
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| T |
49128958 |
ggatgggagatctattggtaacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggggttggatttttggctttttccaaagtttgtga |
49129057 |
T |
|
| Q |
513 |
ttttacgtctaatattaatgttgagcttcagactatgt |
550 |
Q |
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|||||| |||||||||||||||||| |||||||||||| |
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| T |
49129058 |
ttttacatctaatattaatgttgagtttcagactatgt |
49129095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 540
Target Start/End: Original strand, 52246131 - 52246196
Alignment:
| Q |
473 |
gttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagctt |
540 |
Q |
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|||||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||| |||||| |
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| T |
52246131 |
gttagggggttggatttt-ggctttttcagaagtt-gttattttacgtctaatattaatgtcgagctt |
52246196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 548
Target Start/End: Original strand, 41415325 - 41415506
Alignment:
| Q |
365 |
actagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttctt |
464 |
Q |
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|||||||||||||||||| | || |||||||| ||||||||| |||||||||||||| |||| || ||||| | ||| ||||| |||| |||||||||| |
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| T |
41415325 |
actagtttcttggaaacaaccacatgagaatgtgatcaaacttaatgtggatgggagctctaatggtaacc-aggtcattctgcttatggtggtcttcta |
41415423 |
T |
|
| Q |
465 |
aaaaattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactat |
548 |
Q |
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||||||| | ||||||||||||||||||||| ||| || || ||||| ||||||||||||||| ||||||||| |||| |
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| T |
41415424 |
tggaattcgtcaaggggttggatttttggcttttctggaag-ttatggttttaagtctaatattaatgtcgagcttcaggctat |
41415506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 9852430 - 9852372
Alignment:
| Q |
425 |
tattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggggtt |
483 |
Q |
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| T |
9852430 |
tattggtaatctaaatcgttctggttatggtggtcttcttaaaaatttgttagggggtt |
9852372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 538
Target Start/End: Complemental strand, 39125663 - 39125486
Alignment:
| Q |
360 |
tccctactagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtc |
459 |
Q |
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|||| ||||||||||| |||||||| || ||||||| ||||||||||||||| |||||||| |||||| |||| | ||||||||| |||| | ||| |
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| T |
39125663 |
tcccgactagtttcttagaaacacccacctgagaatatgatcaaactcaatgtagatgggagttctattagtaactcaggtcgttctggttatggcagtc |
39125564 |
T |
|
| Q |
460 |
ttcttaaaaattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagc |
538 |
Q |
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| T |
39125563 |
ttcttaggaattcgtcaagggattggatatttgac-ttttccgaacgttgtggttttacatctaatattaatgttgagc |
39125486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 39147260 - 39147329
Alignment:
| Q |
365 |
actagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataac |
434 |
Q |
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||||||| |||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||| |
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| T |
39147260 |
actagttccttggaaacacccacatgagaatgtgatcaaaatcaatgtggatgagagctctattggtaac |
39147329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 29978964 - 29978866
Alignment:
| Q |
367 |
tagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttctta |
465 |
Q |
| |
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||||||||||||||| || || | ||| || || |||||||||||| ||||||| ||||||| ||||| |||||||||| |||| |||||||||||| |
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| T |
29978964 |
tagtttcttggaaactcccacataagattgtgaagaaactcaatgtgcatgggagctctattggtaaccctagtcgttctggttatggtggtcttctta |
29978866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 499
Target Start/End: Complemental strand, 40636114 - 40636012
Alignment:
| Q |
400 |
tcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggg---gttggatttttggctt |
496 |
Q |
| |
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||||| |||||||||||| ||| | ||||| |||| || ||| || || ||||||| ||||||||| |||||||||||||| | |||||||||||||| |
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| T |
40636114 |
tcaaaatcaatgtggatgagagctttattggtaacatatgtccttttggttattgtagtcttcttagaaattcgttaggggggtggtggatttttggctt |
40636015 |
T |
|
| Q |
497 |
ttt |
499 |
Q |
| |
|
||| |
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|
| T |
40636014 |
ttt |
40636012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 33279913 - 33279965
Alignment:
| Q |
439 |
gtcgttctgattattgtggtcttcttaaaaattcgttagggggttggattttt |
491 |
Q |
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|||| |||| |||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
33279913 |
gtcgatctggttatggtggtcttcttaggaattcgttagggggttgaattttt |
33279965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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