View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15372_low_7 (Length: 538)
Name: NF15372_low_7
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 258 - 529
Target Start/End: Complemental strand, 20151348 - 20151095
Alignment:
| Q |
258 |
atctttcatagtttgattaaattgctatgatcgtcacaatcttgcattaaatag-cgttttagtttttaatcgtaaaagtccgtcaatttatttct-caa |
355 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20151348 |
atctttcatagtttgactaaattgctatgatcgtcacaatcttgcattaaatagtcgttttagtttttaatcgtaaaagtccgtcaatttatttcttcaa |
20151249 |
T |
|
| Q |
356 |
ctatactaaatagaaaattagtcttttgaaattatcaaagagtatgactatcaatcaatttggtccttccatcaaaatatttcttttnnnnnnntcaatc |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
20151248 |
ctatactaaatagaaaattagtcttttgaaattatcaaagagtatgactatcaatcaattctgtccttccatcaaaatatttctttt---------aa-- |
20151160 |
T |
|
| Q |
456 |
aaaatcagcaaaagccaaatattgacttcaatagtcttttgatacatccaaacaaacagaacctttagaattat |
529 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20151159 |
---------aaaagacaaatattgacttcaatagtcttttgatacatccaaacaaacagaacctttagaattat |
20151095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 20151652 - 20151557
Alignment:
| Q |
136 |
tatagcgttcgttttctatctagtgtttactgtttacaagttttcatattttactttcagtatgatctctctcaagttacctaaccatttaaaaaa |
231 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20151652 |
tatagcgttcgttttctatctaatgtttaccgtttacaagttttcatattttactttcaatatgatctctctcaagttacctaaccattcaaaaaa |
20151557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20152151 - 20152093
Alignment:
| Q |
1 |
cttaagtctgaaaactcctccaactctttcaacttctatcttaaacaagttgaatataa |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20152151 |
cttaagtctgaaaactcctccaactctttcaacttctatcttaaacaagttgaatataa |
20152093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 20152067 - 20151984
Alignment:
| Q |
54 |
atataataaaatcgcacttggattgatttggtggtgttggcttgaaatc----ttagagcatgctctatctgatgccaagttga |
133 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
20152067 |
atatcataaaaccgcacttggattgatttgatggtgttggcttgggatcttggttggagcatgctctatctgatgccaatttga |
20151984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University