View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15372_low_9 (Length: 496)
Name: NF15372_low_9
Description: NF15372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15372_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 170 - 478
Target Start/End: Complemental strand, 11624891 - 11624583
Alignment:
| Q |
170 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggc |
269 |
Q |
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| T |
11624891 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttctgcaaggc |
11624792 |
T |
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| Q |
270 |
gtgtcaaagatattggactgcaggcggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcacattatcgccac |
369 |
Q |
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| T |
11624791 |
gtgtcaaagatattggactgcaggtggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcgcattatcgccac |
11624692 |
T |
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| Q |
370 |
atcaccatctctgaggctcttgatgcagcaagaattatttcacctaatggaactcatcatcttcaaaatttgaaaaccaatggtagagttctcaactttg |
469 |
Q |
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| T |
11624691 |
atcaccatctctgaggctcttgatgcagcaagaattatttctcctaatggaactcatcatcttcaaaatttgaaaaccaatggtagagttctcaactttg |
11624592 |
T |
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| Q |
470 |
ggttggatc |
478 |
Q |
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| T |
11624591 |
ggttggatc |
11624583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 11625046 - 11624964
Alignment:
| Q |
9 |
agcagagatcaagaacaacaacaattcagcagcaacattaccggagggtattcagaacccaaaaacaccttccatagatgaagaaactt |
97 |
Q |
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| T |
11625046 |
agcagagatcaagaacaacaacaattcagcagcaacattaccggagggt------aacccaaaaacaccttccatagatgaagaaactt |
11624964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 31771803 - 31771910
Alignment:
| Q |
207 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
306 |
Q |
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|||||| || || ||||||| ||| |||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
31771803 |
ggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcaggaggaacaatgaga |
31771902 |
T |
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| Q |
307 |
aatgttcc |
314 |
Q |
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| T |
31771903 |
aatgttcc |
31771910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 2823621 - 2823737
Alignment:
| Q |
207 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
306 |
Q |
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| T |
2823621 |
ggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgaga |
2823720 |
T |
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| Q |
307 |
aatgttccggtgggtgc |
323 |
Q |
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| T |
2823721 |
aacgtaccggtaggtgc |
2823737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 18193381 - 18193495
Alignment:
| Q |
187 |
tgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattgga |
286 |
Q |
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| T |
18193381 |
tgtccaagatgcaaaagcgtagacacaaaattttgttactacaataattacaacgccaaccagccccgacacttctgcaaaaactgtcagagatattgga |
18193480 |
T |
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| Q |
287 |
ctgcaggcggaacca |
301 |
Q |
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| T |
18193481 |
ctgccggaggaacca |
18193495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 18188160 - 18188204
Alignment:
| Q |
207 |
ggacacaaagttctgttactacaataattacaacgtcaatcagcc |
251 |
Q |
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| T |
18188160 |
ggacacaaaattttgttactacaataattacaacgccaaccagcc |
18188204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 3775596 - 3775700
Alignment:
| Q |
207 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
306 |
Q |
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| T |
3775596 |
ggacaccaaattctgctactacaataactacaatgttaaccaacctcgccatttttgcaagaaatgccagagatactggactgccgggggagccatgaga |
3775695 |
T |
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| Q |
307 |
aatgt |
311 |
Q |
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||||| |
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| T |
3775696 |
aatgt |
3775700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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