View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15373_high_10 (Length: 256)
Name: NF15373_high_10
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15373_high_10 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 2490154 - 2490397
Alignment:
| Q |
13 |
aatattcaaaagtcagaagccaataaatcagtgaaagtttaatagaatttatacaaacgttgcaagatttgttagaaattatattttcctgctggacaat |
112 |
Q |
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| T |
2490154 |
aatattcaaaagtcagaagccaataaatcagtgaaagtttaatagaatttatacaaatgttgcaagatttgttagaaattatattttcctgctggacaat |
2490253 |
T |
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| Q |
113 |
agagaatgtggacagaggagtcatacaaattttatttataagctttcaaatgaaaccttcacatctcttataaaacaatatagctcacaaatctgagcca |
212 |
Q |
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| T |
2490254 |
aaagaatgtggacagaggagtcatacaaattttatttataagctttcaaatgaaaccttcacatctcttataaaacaatatagctcacaaatctgagcca |
2490353 |
T |
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| Q |
213 |
ttatgcttttaataaataactaaagcggagcaaaaattcattca |
256 |
Q |
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| T |
2490354 |
ttatgcttttaataaataactaaagcggagcaaaaattcattca |
2490397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 2518136 - 2518329
Alignment:
| Q |
13 |
aatattcaaaagtcagaagccaataaatcagtgaaagtttaatagaatt--tatacaaacgttgcaagatttgttagaaattatattttcctgctggaca |
110 |
Q |
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| T |
2518136 |
aatatttaaaagtcagaagccgataaatcagtgaaaatttatatgcattgttaaaaaaatgtgctaagaattgttagaatttcttttttcctgctggaca |
2518235 |
T |
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| Q |
111 |
atagagaatgtggacagaggagtcatacaaattttatttataagctttcaaatgaaaccttcacatctcttataaaacaatatagctcacaaat |
204 |
Q |
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| T |
2518236 |
ataaagaatatggacagaggagtcatacaactttaatttataagctttcaaatgaaacctttatatctcttataatgctatatagctcacaaat |
2518329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 2524972 - 2525115
Alignment:
| Q |
13 |
aatattcaaaagtcagaagccaataaatcagtgaaagtttaatagaatt--tatacaaacgttgcaagatttgttagaaattatattttcctgctggaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| | ||| || ||||| |||| | |||||| ||||| | || |||| |||||||||| |
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| T |
2524972 |
aatattcaaaagtcagaagccaataaatcagtgaaactttacatgtattattaaacaaatgttgga-gatttggtagaattaattttttgctgctggaca |
2525070 |
T |
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| Q |
111 |
atagagaatgtggacagaggagtcatacaaattttatttataagc |
155 |
Q |
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| T |
2525071 |
ataaagaatgtggacataggagtcatacaactttcatttataagc |
2525115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 2533379 - 2533454
Alignment:
| Q |
96 |
ttttcctgctggacaatagagaatgtggacagaggagtcatacaaattttatttataagctttcaaatgaaacctt |
171 |
Q |
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| T |
2533379 |
ttttcctgctggacaataaagattgtggacagaagagtcatacaactttcatttaaaagctttcaaatgaaacctt |
2533454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 2476762 - 2476818
Alignment:
| Q |
128 |
aggagtcatacaaattttatttataagctttcaaatgaaaccttcacatctcttata |
184 |
Q |
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| T |
2476762 |
aggagtcatacaactttgatttataagctttcaaatgaaaactttacatctcttata |
2476818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 2381156 - 2381114
Alignment:
| Q |
142 |
ttttatttataagctttcaaatgaaaccttcacatctcttata |
184 |
Q |
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| T |
2381156 |
ttttatttataagctttcaaatgaaactattacatctcttata |
2381114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2369144 - 2369112
Alignment:
| Q |
13 |
aatattcaaaagtcagaagccaataaatcagtg |
45 |
Q |
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| T |
2369144 |
aatactcaaaagtcagaagccaataaatcagtg |
2369112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 8286011 - 8285934
Alignment:
| Q |
129 |
ggagtcatacaaattttatttataagctttcaaatgaaaccttcacatctcttata--aaacaatatagctcacaaat |
204 |
Q |
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| T |
8286011 |
ggagtcatgcaattttaatttataagctttcaaatgaaaagttcacatctcttataatatacaatatagatcacaaat |
8285934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 26373314 - 26373346
Alignment:
| Q |
19 |
caaaagtcagaagccaataaatcagtgaaagtt |
51 |
Q |
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| T |
26373314 |
caaaagtcagaagccaataaatcagtgaaagtt |
26373346 |
T |
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