View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15373_high_5 (Length: 358)
Name: NF15373_high_5
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15373_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 89 - 348
Target Start/End: Original strand, 23612145 - 23612408
Alignment:
| Q |
89 |
aaggaagaacacatccttccacgaaagagaggtccactgtagctccccccatcttgctatttacatcac---atgtaattgtgccctttcaaccttggaa |
185 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23612145 |
aaggaagaacacatccttccacaaaagagaggtccactgtagctccccc-atcttgctatttacatcatcatatgtaattgtgccctttcaaccttggaa |
23612243 |
T |
|
| Q |
186 |
gatctcgtatgcttctgtttcatggaattccaaatatcctttgatgttactttgttaagaatcatttcaagaattgtcctatctatatattgaaacaaat |
285 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23612244 |
gatctcgcatgcttctgtttcatggaattccaaatatcctttgatgttactttattaagaatcatttcaagaattgtcctatctatatattgaaacaaat |
23612343 |
T |
|
| Q |
286 |
--aattattggcattgtgatcattcacatatttttcttcccctagtttgagttgctcagcctttg |
348 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23612344 |
aaaattattggcattgagatcattcacatatttttcttcccctagtttgagttgctccgcctttg |
23612408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 23611992 - 23612071
Alignment:
| Q |
16 |
catatctcacacctgaaagagcatattggaactcaccctcaaccgagcccattcgacccacatatcaaaccaaaaggaag |
95 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23611992 |
catatctcacacctgaaagagcatatgggaactcaccctcaactgagcccattcgacccacatatcaaaccaaaaggaag |
23612071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 38708997 - 38708932
Alignment:
| Q |
194 |
atgcttctgtttcatggaattccaaatatcctttgatgttactttgttaagaatcatttcaagaat |
259 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||| |||||| ||| |||||||||| ||| |||||| |
|
|
| T |
38708997 |
atgcttctgttttatggaatcccatatatccttcgatgtttcttggttaagaatcgttttaagaat |
38708932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University