View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15373_low_1 (Length: 604)
Name: NF15373_low_1
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15373_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 203 - 516
Target Start/End: Original strand, 17751579 - 17751895
Alignment:
| Q |
203 |
taaccctccaatttttagaaaaaatggatcatagtattctgaagtttggctgaaatgtaagtaaaatatgatcaagaattattgtatctaataatcaaac |
302 |
Q |
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| T |
17751579 |
taaccctccgatttttagaaaaaatggattatagtagtctggagctcggccgaaagataagtaaaatatgattaagaattattgtatctaataatcaaac |
17751678 |
T |
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| Q |
303 |
tcaagctcttttgaagaattcgtttttggaggagctcgttcaccacttctgtccaattgtttcgttaaagttgttgaaaattata-ttttttaagaaaga |
401 |
Q |
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| T |
17751679 |
tcaagctcttttgaagaattcgtttttggaggagctcgttcaccacttctgtccaattgtttggttaaagttgttgaaaattatatttttttaggaaaga |
17751778 |
T |
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| Q |
402 |
gtaatattatttgtcttagttaaatgtatgtaagtgggtgggtctc--atataaagagattaattttcagattgaagagatcacacaaaattttacgtca |
499 |
Q |
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| T |
17751779 |
ttaatactatttgtcttagttaaatctatgtaagtgagtgggtctcatatataaagagattaattttcagattgaagagatcacacaaaattttacgtca |
17751878 |
T |
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| Q |
500 |
gatgtgtttctaaccat |
516 |
Q |
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| T |
17751879 |
aatgtgcttctaaccat |
17751895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 17751346 - 17751539
Alignment:
| Q |
12 |
tattctctactacagctattgcatagaaaaacatttgtctcatgtcaattataacaaccagannnnnnnggcaatttatagttggatcaatttctggaaa |
111 |
Q |
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| T |
17751346 |
tattctctactacagctattgcatagaata-catttgtctcatgtcaattataacaaccagacccccccggcaatttatagttggatcaatttctggaaa |
17751444 |
T |
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| Q |
112 |
attaaatcaatagctaatcagtaatggtgtctgtctcttgtcaagatgcctattagtactagttgaaaataaaatgagtattgacaaattataac |
206 |
Q |
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| T |
17751445 |
attaaatcaatagctaatcagtaatggtgtctgtctcttgtcaagatgcctattagtacttgttgaaaataaaaggagtattaacaaattataac |
17751539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 548 - 587
Target Start/End: Original strand, 17751936 - 17751975
Alignment:
| Q |
548 |
aattttaactaaacaaatcgacatatttaaaatcatatct |
587 |
Q |
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| T |
17751936 |
aattttaactaaacaaatcgacatatttaaaatcatatct |
17751975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 17750620 - 17750683
Alignment:
| Q |
44 |
atttgtctcatgtcaattataacaaccagannnnnnnggcaatttatagttggatcaatttctg |
107 |
Q |
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| T |
17750620 |
atttgtctcatgccaattataaccaccagacccccccggcaatttatggttggatcaatttctg |
17750683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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