View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15373_low_10 (Length: 316)

Name: NF15373_low_10
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15373_low_10
NF15373_low_10
[»] chr8 (21 HSPs)
chr8 (9-281)||(22197811-22198083)
chr8 (237-316)||(4786366-4786445)
chr8 (235-281)||(43737882-43737928)
chr8 (235-313)||(29510335-29510419)
chr8 (253-316)||(8342942-8343003)
chr8 (256-316)||(22595965-22596025)
chr8 (235-316)||(22651920-22652007)
chr8 (235-316)||(4298914-4298994)
chr8 (271-316)||(13436992-13437037)
chr8 (271-316)||(20873055-20873100)
chr8 (235-281)||(21465370-21465416)
chr8 (235-281)||(24413629-24413675)
chr8 (236-281)||(926857-926902)
chr8 (271-316)||(15816157-15816202)
chr8 (271-316)||(18170510-18170555)
chr8 (271-316)||(18634078-18634123)
chr8 (235-316)||(20785493-20785574)
chr8 (271-316)||(30271319-30271364)
chr8 (271-311)||(4673458-4673498)
chr8 (234-286)||(29447412-29447464)
chr8 (272-316)||(41831968-41832012)
[»] chr2 (17 HSPs)
chr2 (19-145)||(32973984-32974110)
chr2 (234-316)||(21374727-21374810)
chr2 (235-314)||(26769461-26769540)
chr2 (256-315)||(38117188-38117247)
chr2 (235-282)||(24975384-24975431)
chr2 (236-281)||(18276466-18276511)
chr2 (271-316)||(30404878-30404923)
chr2 (264-309)||(37986758-37986803)
chr2 (235-316)||(1886906-1886985)
chr2 (233-316)||(23717975-23718057)
chr2 (233-316)||(24105647-24105729)
chr2 (271-316)||(24894375-24894420)
chr2 (271-316)||(30717558-30717603)
chr2 (271-316)||(34337204-34337249)
chr2 (271-316)||(37558963-37559008)
chr2 (235-275)||(15907901-15907941)
chr2 (235-316)||(20539702-20539783)
[»] chr1 (17 HSPs)
chr1 (235-316)||(22881644-22881725)
chr1 (235-316)||(38078689-38078771)
chr1 (235-314)||(17831561-17831640)
chr1 (236-316)||(6415029-6415110)
chr1 (271-316)||(9103626-9103671)
chr1 (235-316)||(10475005-10475086)
chr1 (235-316)||(398793-398880)
chr1 (236-288)||(3490446-3490498)
chr1 (235-281)||(10577804-10577850)
chr1 (256-306)||(35702626-35702676)
chr1 (234-280)||(7918281-7918327)
chr1 (275-316)||(113289-113330)
chr1 (271-316)||(18556484-18556529)
chr1 (235-316)||(21530639-21530720)
chr1 (271-316)||(46348411-46348456)
chr1 (256-316)||(24577214-24577274)
chr1 (235-275)||(25934572-25934612)
[»] chr6 (24 HSPs)
chr6 (235-313)||(12868706-12868784)
chr6 (235-316)||(5970136-5970217)
chr6 (235-316)||(426542-426629)
chr6 (235-316)||(7938060-7938147)
chr6 (236-316)||(16766642-16766728)
chr6 (235-313)||(9107401-9107485)
chr6 (237-316)||(12696277-12696355)
chr6 (235-316)||(17168844-17168925)
chr6 (235-316)||(8713929-8714011)
chr6 (236-316)||(31959111-31959190)
chr6 (235-313)||(8777004-8777088)
chr6 (271-316)||(17841617-17841662)
chr6 (236-316)||(20371138-20371219)
chr6 (234-315)||(5732539-5732626)
chr6 (236-316)||(7377930-7378010)
chr6 (234-274)||(18367780-18367820)
chr6 (235-316)||(3209326-3209413)
chr6 (234-316)||(7930254-7930336)
chr6 (237-316)||(9658832-9658910)
chr6 (236-316)||(16388261-16388341)
chr6 (271-316)||(28152085-28152129)
chr6 (235-275)||(1681702-1681742)
chr6 (235-275)||(10294051-10294091)
chr6 (271-315)||(16833294-16833338)
[»] chr3 (29 HSPs)
chr3 (235-313)||(21479068-21479146)
chr3 (234-316)||(14747510-14747593)
chr3 (235-316)||(39756186-39756267)
chr3 (233-316)||(15796322-15796411)
chr3 (235-316)||(3164053-3164140)
chr3 (264-316)||(40052311-40052363)
chr3 (271-316)||(10268514-10268559)
chr3 (256-316)||(10954922-10954983)
chr3 (228-281)||(24205110-24205163)
chr3 (235-281)||(750688-750734)
chr3 (235-281)||(14027959-14028005)
chr3 (234-275)||(15864788-15864829)
chr3 (272-316)||(4987319-4987363)
chr3 (255-316)||(28917965-28918032)
chr3 (265-316)||(1438784-1438835)
chr3 (235-282)||(3180826-3180873)
chr3 (235-282)||(10318108-10318155)
chr3 (235-315)||(10335315-10335401)
chr3 (253-316)||(35222906-35222969)
chr3 (235-274)||(52369739-52369778)
chr3 (235-281)||(25093446-25093492)
chr3 (236-281)||(16000085-16000130)
chr3 (255-315)||(33359730-33359791)
chr3 (260-313)||(34185154-34185207)
chr3 (235-275)||(7171446-7171486)
chr3 (235-275)||(10455734-10455774)
chr3 (264-316)||(20503444-20503496)
chr3 (271-311)||(26492238-26492278)
chr3 (234-274)||(38731161-38731201)
[»] chr5 (22 HSPs)
chr5 (251-316)||(31084289-31084354)
chr5 (256-316)||(2436893-2436953)
chr5 (271-316)||(19552571-19552616)
chr5 (235-308)||(15382421-15382500)
chr5 (235-275)||(25888370-25888410)
chr5 (234-281)||(6401441-6401488)
chr5 (271-316)||(14674255-14674300)
chr5 (264-316)||(19429411-19429463)
chr5 (235-316)||(21522694-21522781)
chr5 (235-316)||(21533260-21533347)
chr5 (240-316)||(13287427-13287509)
chr5 (238-316)||(8419985-8420058)
chr5 (239-285)||(16941973-16942018)
chr5 (235-281)||(23016060-23016106)
chr5 (235-280)||(20683325-20683370)
chr5 (271-316)||(21191084-21191129)
chr5 (235-288)||(32676876-32676929)
chr5 (235-280)||(34276801-34276846)
chr5 (271-316)||(39698527-39698572)
chr5 (272-316)||(6247609-6247653)
chr5 (235-316)||(22013364-22013445)
chr5 (271-307)||(36642799-36642835)
[»] scaffold0027 (1 HSPs)
scaffold0027 (235-316)||(46626-46713)
[»] chr7 (17 HSPs)
chr7 (235-316)||(25481846-25481933)
chr7 (235-316)||(9778452-9778531)
chr7 (237-278)||(1885519-1885560)
chr7 (234-274)||(17851374-17851414)
chr7 (234-316)||(5409864-5409952)
chr7 (235-308)||(25822605-25822678)
chr7 (272-316)||(7438693-7438737)
chr7 (235-309)||(24105629-24105702)
chr7 (235-281)||(8160374-8160420)
chr7 (237-316)||(11061104-11061189)
chr7 (235-281)||(26329451-26329497)
chr7 (271-316)||(9408362-9408407)
chr7 (271-316)||(11722126-11722171)
chr7 (271-316)||(24339628-24339673)
chr7 (236-281)||(35861903-35861948)
chr7 (240-316)||(42720918-42720994)
chr7 (235-316)||(43027497-43027578)
[»] chr4 (13 HSPs)
chr4 (235-316)||(23293014-23293101)
chr4 (235-316)||(15029715-15029796)
chr4 (235-308)||(42640476-42640549)
chr4 (235-275)||(24343451-24343491)
chr4 (235-312)||(12628617-12628693)
chr4 (235-282)||(37203222-37203269)
chr4 (235-281)||(4157102-4157148)
chr4 (258-308)||(15835675-15835725)
chr4 (235-307)||(28720827-28720898)
chr4 (271-316)||(11596380-11596425)
chr4 (267-316)||(50280863-50280912)
chr4 (235-275)||(3144713-3144753)
chr4 (256-308)||(7251663-7251715)
[»] scaffold0021 (1 HSPs)
scaffold0021 (234-316)||(130425-130513)
[»] scaffold0019 (1 HSPs)
scaffold0019 (256-308)||(71694-71746)
[»] scaffold0053 (1 HSPs)
scaffold0053 (235-311)||(8742-8824)
[»] scaffold0504 (1 HSPs)
scaffold0504 (235-281)||(8783-8829)
[»] scaffold0103 (1 HSPs)
scaffold0103 (271-316)||(51797-51842)
[»] scaffold0223 (1 HSPs)
scaffold0223 (251-316)||(20132-20203)
[»] scaffold0007 (1 HSPs)
scaffold0007 (235-316)||(225296-225383)
[»] scaffold0171 (1 HSPs)
scaffold0171 (235-316)||(23371-23451)
[»] scaffold0116 (1 HSPs)
scaffold0116 (235-274)||(9842-9881)
[»] scaffold0066 (1 HSPs)
scaffold0066 (258-316)||(33391-33447)
[»] scaffold0475 (1 HSPs)
scaffold0475 (237-275)||(3262-3300)
[»] scaffold0697 (1 HSPs)
scaffold0697 (235-316)||(1594-1675)
[»] scaffold0003 (1 HSPs)
scaffold0003 (271-316)||(241580-241625)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 22198083 - 22197811
Alignment:
Q  9 agcagagaggtgtggagctgatttgactgatgcaaagagatatcatcgccgccataaagtgtgtgagtttcattccaaggcacctgttgtggtggttgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22198083 agcagagaggtgtggagctgatttgactgatgcaaagagatatcatcgccgccataaagtgtgcgagtttcattccaaggcacctgttgtggtggttgca 22197984  T
Q  109 gggatgaggcagaggttttgtcaacaatgtagcaggtcttcaatcttatatctacaccattttctctaacactcatcaataannnnnnnnnnnnnnnnnn 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  22197983 gggatgaggcagaggttttgtcaacaatgtagcaggtcttcaatcttatatctacaccattttctctaacactcatcaataatttgttttttcttttgac 22197884  T
Q  209 nnnnnnataggtggtagagtcggtcactatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  22197883 atgtttataggtggtagagtcggtcactatgaagcacggatctagacacggacaccggacacgacacagacac 22197811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 4786445 - 4786366
Alignment:
Q  237 atgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||   |||| ||||| | ||||||||||||    
T  4786445 atgaagcacggatacagacactgacaccgaacacgacactgacacgccgacaccattaataatttaagaaaatcacataa 4786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 43737928 - 43737882
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  43737928 ctatgaagcacggatacagacacggacaccggacacgacacggacac 43737882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 29510419 - 29510335
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcaca 313  Q
    ||||||||||||||| | |||| ||||||||||||||||||      ||||||||||||| || ||| |||||||||||||||||    
T  29510419 ctatgaagcacggatactgacatggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcaca 29510335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 8342942 - 8343003
Alignment:
Q  253 gacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| |||||||||||||||||  |||||| || ||| ||||||||||||||||||||    
T  8342942 gacacggacatcggacacgacactgaca--ccgacatagctaataatttgaaaaaatcacataa 8343003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 22595965 - 22596025
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| ||||||||||||||||| || ||| ||||| ||||||| ||||||    
T  22595965 acggacaccggacacaacactgacacgccgacacagctaataatttaaaaaaataacataa 22596025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 22651920 - 22652007
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgaca------ctgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||| |||||| | ||||| ||||||||||||||||      |||||||||||||| || ||| ||||||||||||||||||||    
T  22651920 ctatgaagtacggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataa 22652007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 4298994 - 4298914
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||   |||||||||||  ||||| || ||| ||||||||||| |||||| ||||||||||||||||||||    
T  4298994 ctatgaagcacggatatggacacggacac--gacacagatactaacacgccgacacagttaataatttgaaaaaatcacataa 4298914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 13437037 - 13436992
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||    
T  13437037 gacactgacacgccgacacagctaataatttgaaaaaatcacataa 13436992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 20873055 - 20873100
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||    
T  20873055 gacactgacacgccgacatagataataatttgaaaaaatcacataa 20873100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 21465370 - 21465416
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||| |||||| |||| |||||||||||||||||||| |||||    
T  21465370 ctatgaaggacggatacagatacggacaccggacacgacacggacac 21465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 24413675 - 24413629
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| | |||||||||||| |||||||||| |||||    
T  24413675 ctatgaagcacggatacggacacggacaccagacacgacacggacac 24413629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 926902 - 926857
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||||||||| |  |||||||||||||||||||||| |||||    
T  926902 tatgaagcacggatacgaacacggacaccggacacgacacggacac 926857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 15816202 - 15816157
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||    
T  15816202 gacactgacacgccgacacaactaataatttgaaaaaatcacataa 15816157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 18170555 - 18170510
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||    
T  18170555 gacactgacacgccgacacaattaaaaatttgaaaaaattacataa 18170510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 18634123 - 18634078
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||    
T  18634123 gacactgacacgccgacacaattaaaaatttgaaaaaattacataa 18634078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 20785574 - 20785493
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||||||||||| ||||||||| || | ||| |||  | ||| |||||||  |||||||||||    
T  20785574 ctatgaagcacggatacggacacggacaccgtacacgacacggatatgccaacaccgctaataatttgaggaaatcacataa 20785493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 30271364 - 30271319
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || |||  |||||||||||||||||||    
T  30271364 gacactgacacgccgacacagctaatcatttgaaaaaatcacataa 30271319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 4673498 - 4673458
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatca 311  Q
    |||||||||||||||||| || ||| |||||||||||||||    
T  4673498 gacactgacacgccgacacagataataatttgaaaaaatca 4673458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 29447412 - 29447464
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgacactgacacgccga 286  Q
    ||||||||||||||||   ||||| ||||||||||||| ||| ||||||||||    
T  29447412 actatgaagcacggatatggacacagacaccggacacggcacagacacgccga 29447464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 41832012 - 41831968
Alignment:
Q  272 acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||| |||| ||||||| |||||| ||||||||||||||||||||    
T  41832012 acacagacatgccgacacagttaataatttgaaaaaatcacataa 41831968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 32974110 - 32973984
Alignment:
Q  19 tgtggagctgatttgactgatgcaaagagatatcatcgccgccataaagtgtgtgagtttcattccaaggcacctgttgtggtggttgcagggatgaggc 118  Q
    |||||||||||||| |||  | |||||||||||||||| |||||||| || |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  32974110 tgtggagctgatttaactttttcaaagagatatcatcgtcgccataaggtttgtgaggttcattccaaagcatctgttgtggtggttgcagggatgaggc 32974011  T
Q  119 agaggttttgtcaacaatgtagcaggt 145  Q
    | |||||||| ||||||||||||||||    
T  32974010 aaaggttttgccaacaatgtagcaggt 32973984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 21374810 - 21374727
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||| | |||||||||||||||||| |||||| ||||||||||| || ||| ||||||||||||| ||||||    
T  21374810 actatgaagcacggatacggacacggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataa 21374727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 26769461 - 26769540
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacat 314  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |  ||| |||||||||| |||||||    
T  26769461 ctatgaagcacggatacggacacggacaccggacacgacacagacacgccgacacaactaataatttgaaaatatcacat 26769540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 38117247 - 38117188
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacata 315  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  38117247 acggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacata 38117188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 24975431 - 24975384
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacg 282  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  24975431 ctatgaagcacagatacaggcacggacaccggacacgacactgacacg 24975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 18276466 - 18276511
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||||||||| |||||||||||||||||||||| || |||||    
T  18276466 tatgaagcacggatacagacacggacaccggacacgatacagacac 18276511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 30404923 - 30404878
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||||    
T  30404923 gacactgacacgccgacacggttaataatttgaaaaaatcacataa 30404878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 37986758 - 37986803
Alignment:
Q  264 cggacacgacactgacacgccgacaaagttaacaatttgaaaaaat 309  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||    
T  37986758 cggacacgacactgacacgccgacacagataataatttgaaaaaat 37986803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 1886985 - 1886906
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| ||||||||||||| ||| ||||||  ||||  || ||| |||||| ||||||||||| | ||||||    
T  1886985 ctatgaagcacggatacagacacggacactggatacgacatggaca--ccaacacagttaataatttgaaaaatttacataa 1886906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 23717975 - 23718057
Alignment:
Q  233 cactatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||| ||||||||||||   ||||| ||||||||||| ||||||  | ||| ||||||| ||| ||||||||    
T  23717975 cactatgaagcacggatacagacacggaca--tgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataa 23718057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 24105647 - 24105729
Alignment:
Q  233 cactatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||| ||||||||||||   ||||| ||||||||||| ||||||  | ||| ||||||| ||| ||||||||    
T  24105647 cactatgaagcacggatacagacacggaca--tgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataa 24105729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 24894375 - 24894420
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||| ||||||||||||||    
T  24894375 gacactgacacgccgacacagctaataatttaaaaaaatcacataa 24894420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 30717603 - 30717558
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  30717603 gacactgacaaaccgacaaagctaataatttgaaaaaatcacataa 30717558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 34337249 - 34337204
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||| ||||||||||||| |||| | ||||||||||||||||||||    
T  34337249 gacattgacacgccgacacagttgataatttgaaaaaatcacataa 34337204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 37558963 - 37559008
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| |||||| |||||||||||||    
T  37558963 gacactgacacgccgacacagctaataatttgtaaaaatcacataa 37559008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 15907941 - 15907901
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||| || ||||||||||| ||||||||||    
T  15907941 ctatgaagcacggatacaaacacggacaccagacacgacac 15907901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 20539783 - 20539702
Alignment:
Q  235 ctatgaagcacggatccagacac-ggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||| ||||||  |||||| ||||||||||| ||||| || ||| ||||||||||||||| ||||    
T  20539783 ctatgaagcacggatacggacactggacac--gacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataa 20539702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 22881725 - 22881644
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||||    
T  22881725 ctatgaagcacggatatagacacggacaccggacacgacactgacacgccgacacaactaataatttgaaaaaatcacataa 22881644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 38078771 - 38078689
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||||||||    
T  38078771 ctatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataa 38078689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 17831640 - 17831561
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacat 314  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||  | ||| ||||||| ||||||||||    
T  17831640 ctatgaagcacggatacagacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaatcacat 17831561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 6415110 - 6415029
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||| | |||||| ||||||||||| ||||||||||||||||||  | |||  |||||| ||||||||||||    
T  6415110 tatgaagcacggatacggacacgaacaccggacacggacactgacacgccgacatcgctaattatttgagaaaatcacataa 6415029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 9103626 - 9103671
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  9103626 gacactgacacgccgacacagttaataatttgaaaaaatcacataa 9103671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 10475086 - 10475005
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||    ||||||||||||||||||||| |||||||||||||  | ||| || |||| ||||||||||||    
T  10475086 ctatgaagcacggatatgaacacggacaccggacacgacattgacacgccgacaccgctaataacttgagaaaatcacataa 10475005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 398880 - 398793
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg------acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||| |||||||||||||||      |||||||||||||||||  | ||| ||||||||||||||||||||    
T  398880 ctatgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataa 398793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 3490498 - 3490446
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgacactgacacgccgaca 288  Q
    |||||||||||||| | || || ||||||||||||||||||||||||||||||    
T  3490498 tatgaagcacggatacggatacagacaccggacacgacactgacacgccgaca 3490446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 10577850 - 10577804
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||    
T  10577850 ctatgaagcacggatacggacacggacaccggacacgacacggacac 10577804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 35702676 - 35702626
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaa 306  Q
    ||||||||||||||||||||||||| ||||||| || ||| ||||||||||    
T  35702676 acggacaccggacacgacactgacatgccgacacagctaataatttgaaaa 35702626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 7918327 - 7918281
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgacactgaca 280  Q
    |||||||||||||| | |||||| |||||||||||||||||| ||||    
T  7918327 actatgaagcacggttacagacatggacaccggacacgacacagaca 7918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 113289 - 113330
Alignment:
Q  275 ctgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||| || ||| ||||||||||||||||||||    
T  113289 ctgacacgccgacacagctaataatttgaaaaaatcacataa 113330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 18556529 - 18556484
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| |||||||||| |||||||||    
T  18556529 gacactgacacgccgacacagctaataatttgaaaatatcacataa 18556484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 21530639 - 21530720
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||| |||||||||| || || | |||||| |||| ||||| ||||||||||||  ||||| ||||||| ||||||| ||||    
T  21530639 ctattaagcacggatacaaactccgacaccagacatgacacagacacgccgacaccgttaataatttgagaaaatcatataa 21530720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 46348456 - 46348411
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||||||||||||| ||||    
T  46348456 gacactgacacgccgacacagctaataatttgaaaaaatcatataa 46348411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 24577274 - 24577214
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||| | ||||||||| ||||||| |||| |  ||| ||||||||||||||||||||    
T  24577274 acggacactgaacacgacacggacacgctgacacaactaataatttgaaaaaatcacataa 24577214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 25934572 - 25934612
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  25934572 ctatgaagcacggatacggacacggacaccggacatgacac 25934612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 12868784 - 12868706
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcaca 313  Q
    |||||||||| |||| | ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  12868784 ctatgaagcagggatacggactcggacaccggacacgacactgacacgccgacacagttaataatttgaaaaaatcaca 12868706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 5970217 - 5970136
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| ||| | ||||||||||||||||| ||||| |||||| ||||| |||||| ||||||||||||||||||||    
T  5970217 ctatgaagcacagatacggacacggacaccggacatgacacggacacgtcgacacagttaataatttgaaaaaatcacataa 5970136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 426629 - 426542
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| |||| |||||||||| ||||||||||||||      ||||||||||||| |||||| ||||||||||||||||||||    
T  426629 ctatgaagcatggatacagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataa 426542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 7938060 - 7938147
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac------gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||||||||||||||||      |||||||||||||||||| || ||| ||||||||||||||| ||||    
T  7938060 ctatgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataa 7938147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 16766642 - 16766728
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgaca------ctgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||| |||| | ||||||||||||||||||||||      |||||||||||||| || ||| ||||||||||||||||||||    
T  16766642 tatgaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataa 16766728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 9107485 - 9107401
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg------acactgacacgccgacaaagttaacaatttgaaaaaatcaca 313  Q
    ||||||||||||||| | |||||||||||||||||||      ||||| ||||||||||| || ||| |||||||||||||||||    
T  9107485 ctatgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcaca 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 12696277 - 12696355
Alignment:
Q  237 atgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||| | |||||||||||  |||||| ||||||||||||||||| || ||| ||||||||||||| ||||||    
T  12696277 atgaagcacggatacggacacggacac--gacacggacactgacacgccgacacagctaataatttgaaaaaattacataa 12696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 17168844 - 17168925
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| ||| ||||||||||||||| |||||||||  ||||| |||||  | ||| ||||||||||||| ||||||    
T  17168844 ctatgaagcacagattcagacacggacaccgaacacgacacaaacacgtcgacattgataataatttgaaaaaatgacataa 17168925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 8713929 - 8714011
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttg-aaaaaatcacataa 316  Q
    |||||||||||  || | ||||||||||||||||| ||||  |||||| ||||| |||||| |||||| ||||||||||||||    
T  8713929 ctatgaagcacaaatacggacacggacaccggacatgacatggacacgtcgacacagttaataatttgaaaaaaatcacataa 8714011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 31959111 - 31959190
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacga-cactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||| | ||||||||||   ||||||| ||||||||||||| || || ||| ||||||||||||||||||||    
T  31959111 tatgaagcacggatacggacacggacat--gacacgaacactgacacgccgtcacagctaataatttgaaaaaatcacataa 31959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 8777088 - 8777004
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg------acactgacacgccgacaaagttaacaatttgaaaaaatcaca 313  Q
    ||||||||||||||| | |||||||||| ||||||||      ||||||||||||||||| |  ||| |||||||||||||||||    
T  8777088 ctatgaagcacggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcaca 8777004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 17841662 - 17841617
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||    
T  17841662 gacactgacacgccgacacagctaataatttgaaaaaatcacataa 17841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 20371219 - 20371138
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||| | ||||| || |||||||||| ||| |||||||||||||  | ||| ||||||| ||||||||||||    
T  20371219 tatgaagcacggatacggacacagaaaccggacacggacattgacacgccgacaccgctaataatttgagaaaatcacataa 20371138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 5732626 - 5732539
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgaca------ctgacacgccgacaaagttaacaatttgaaaaaatcacata 315  Q
    |||| |||||| |||| ||||||||||||| ||||||||||      ||||||||||||||  ||||| ||||||| |||||||||||    
T  5732626 actacgaagcatggatacagacacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacata 5732539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 7377930 - 7378010
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||| | ||| | |||||||||||| |||| ||||| ||||||  | ||| ||||||| ||||||||||||    
T  7377930 tatgaagcacggatacggacccagacaccggacacaacacagacaccccgacaccgctaaaaatttgagaaaatcacataa 7378010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 18367780 - 18367820
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgaca 274  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  18367780 actatgaagcacggatacggacacggacaccggacacgaca 18367820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 3209326 - 3209413
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacact-----gacacgccgacaaagttaacaatttg-aaaaaatcacataa 316  Q
    ||||| ||||||||| || ||||||||||||||||||||||      |||||||||||| || ||| |||||| ||||||||||||||    
T  3209326 ctatgtagcacggatacaaacacggacaccggacacgacacgacacagacacgccgacacagctaataatttgaaaaaaatcacataa 3209413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 7930254 - 7930336
Alignment:
Q  234 actatgaagcacggatccagacac-ggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| |||| ||||||| |||||| | ||  |||||||||| ||||||| | |||| ||||||||||||||||||||    
T  7930254 actatgaagcatggatacagacaccggacacagaacg-gacactgacatgccgacacaattaataatttgaaaaaatcacataa 7930336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 9658832 - 9658910
Alignment:
Q  237 atgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||| ||||||| |||||  |||||| |||||||||||||||||  | ||| ||||| | ||||||||||||    
T  9658832 atgaagcacggatacagacacagacac--gacacggacactgacacgccgacaccgctaataatttaagaaaatcacataa 9658910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 16388341 - 16388261
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| |||  ||||||||||| |||||||| ||||||||||| ||| || |  || ||||||||||||||||||||    
T  16388341 tatgaagcaccgatagagacacggacatcggacacggacactgacacgtcgataa-gcaaataatttgaaaaaatcacataa 16388261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 28152085 - 28152129
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||    
T  28152085 gacactgacacgccgacaaagctaataatttg-aaaaatcacataa 28152129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 1681702 - 1681742
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||| ||||||| ||||||| |||||||||    
T  1681702 ctatgaagcacggatacagacacagacaccgaacacgacac 1681742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 10294051 - 10294091
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||| | |||||| ||||||||||||||||    
T  10294051 ctatgaagcacggatacggacacgaacaccggacacgacac 10294091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 16833294 - 16833338
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacata 315  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||    
T  16833294 gacactgacacgccgacacaactaataatttgaaaaaatcacata 16833338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 21479068 - 21479146
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcaca 313  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  21479068 ctatgaagcatggatacggacacggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcaca 21479146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 14747510 - 14747593
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttg-aaaaaatcacataa 316  Q
    |||||||||||||||| | || ||||||||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||    
T  14747510 actatgaagcacggatacggatacggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaaatcacataa 14747593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 39756186 - 39756267
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||   || ||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  39756186 ctatgaagcacggatatggatacggacatcggacacgacactgacacgccgacaaaattaataatttaaaaaaatcacataa 39756267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 15796411 - 15796322
Alignment:
Q  233 cactatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||   |||||||||||||||||||||||      ||||||||||||| |||||| ||||||||||||||| ||||    
T  15796411 cactatgaagcacggatatggacacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataa 15796322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 3164140 - 3164053
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| |||||||||||||||||||||||||      || |||| ||||| || ||| ||||||||||||||||||||    
T  3164140 ctatgaagcacggatacagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataa 3164053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 40052311 - 40052363
Alignment:
Q  264 cggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  40052311 cggacacgacactgacacgccgacacagctaataatttgaaaaaatcacataa 40052363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 10268559 - 10268514
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  10268559 gacactgacacgccgacacagttaataatttgaaaaaatcacataa 10268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 10954922 - 10954983
Alignment:
Q  256 acggacaccggacacga-cactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||| |||||||||||||||| |  ||| ||||||||||||||||||||    
T  10954922 acggacaccggacacgaacactgacacgccgacacaactaataatttgaaaaaatcacataa 10954983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 24205163 - 24205110
Alignment:
Q  228 tcggtcactatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||| |||||    
T  24205163 tcggtccctatgaagcacggacacagacacggacaccggacacgacacggacac 24205110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 750734 - 750688
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||    
T  750734 ctatgaagcacggatacggacacggacaccggacacgacacggacac 750688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 14027959 - 14028005
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||    
T  14027959 ctatgaagcacggatacggacacggacaccggacacgacacggacac 14028005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 15864788 - 15864829
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgacac 275  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  15864788 actatgaagcacggacacagacacggacaccggacacgacac 15864829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 4987363 - 4987319
Alignment:
Q  272 acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaatcacataa 4987319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 28917965 - 28918032
Alignment:
Q  255 cacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||||||      ||||||||||||| || ||| ||||||||||||||||||||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataa 28918032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 1438784 - 1438835
Alignment:
Q  265 ggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||| ||||||  | ||||||||||| ||||||||||||    
T  1438784 ggacacgacactgacacaccgacatcgctaacaatttgagaaaatcacataa 1438835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 3180873 - 3180826
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacg 282  Q
    ||||||||||||||  || |||||||||||||||| ||||||||||||    
T  3180873 ctatgaagcacggacacaaacacggacaccggacaggacactgacacg 3180826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 10318155 - 10318108
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacg 282  Q
    ||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  10318155 ctatgaagcacggatacgaacacggacaccggacacgacacggacacg 10318108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 10335401 - 10335315
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg------acactgacacgccgacaaagttaacaatttgaaaaaatcacata 315  Q
    ||||||||||||||| |  ||||||||||||||||||      ||||||||||||||||| |  ||| ||||||||||| |||||||    
T  10335401 ctatgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacata 10335315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 35222906 - 35222969
Alignment:
Q  253 gacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||| |||||||||| |||||||||||| |  ||||| ||| | ||||||||||||    
T  35222906 gacacggacaccagacacgacacagacacgccgacacaactaacatttttagaaaatcacataa 35222969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 52369739 - 52369778
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgaca 274  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  52369739 ctatgaagcacggacacagacacggacaccggacacgaca 52369778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 25093446 - 25093492
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||| |||||| || |||| |||||||||||||||||||||||    
T  25093446 ctatgaagtacggatacaaacacagacaccggacacgacactgacac 25093492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 16000130 - 16000085
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||||||||| | ||||||||||||| ||||||||| |||||    
T  16000130 tatgaagcacggatacggacacggacaccgaacacgacacagacac 16000085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 33359730 - 33359791
Alignment:
Q  255 cacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacata 315  Q
    |||||||||||||||| ||||||||||||| |||| || ||| ||||||||||  |||||||    
T  33359730 cacggacaccggacacagacactgacacgctgacacagctaataatttgaaaaggtcacata 33359791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 34185207 - 34185154
Alignment:
Q  260 acaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcaca 313  Q
    ||||||||||||||| |||||||||||||  | ||| ||||| |||||||||||    
T  34185207 acaccggacacgacagtgacacgccgacacggctaataatttcaaaaaatcaca 34185154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 7171446 - 7171486
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||| | ||||| |||||||||||||||||    
T  7171446 ctatgaagcacggatacggacacagacaccggacacgacac 7171486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 10455734 - 10455774
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    |||||||||||||||  |||||||||||| |||||||||||    
T  10455734 ctatgaagcacggatatagacacggacactggacacgacac 10455774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 20503444 - 20503496
Alignment:
Q  264 cggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||||||||||| |   || ||||||||||||| ||||||    
T  20503444 cggacacgacactgacacgccgacacaacaaataatttgaaaaaatgacataa 20503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 26492278 - 26492238
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatca 311  Q
    |||||||||||||||||| || ||| |||||||||||||||    
T  26492278 gacactgacacgccgacagagctaataatttgaaaaaatca 26492238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 38731161 - 38731201
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgaca 274  Q
    |||||||||||||||| | |||||||||| |||||||||||    
T  38731161 actatgaagcacggatgcggacacggacaacggacacgaca 38731201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 31084289 - 31084354
Alignment:
Q  251 cagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  31084289 cagacatggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacataa 31084354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 2436893 - 2436953
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||||||||||||||||||  | ||| |||||| |||||||||||||    
T  2436893 acggacaccggacacgacactgacacgccgacaccgctaataatttgcaaaaatcacataa 2436953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 19552616 - 19552571
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  19552616 gacactgacacgccgacacagttaataatttgaaaaaatcacataa 19552571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 15382421 - 15382500
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaa 308  Q
    ||||||||||||||| | |||||||||||||||||||||||      ||||||||||||| || ||| ||||||||||||    
T  15382421 ctatgaagcacggatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 25888410 - 25888370
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  25888410 ctatgaagcacggatccagacacggacacaggacacgacac 25888370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 6401441 - 6401488
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||||    
T  6401441 actatgaagcacggatacagacacggacaccggacgcgacacggacac 6401488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 14674255 - 14674300
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||    
T  14674255 gacactgacacgccgacacagctaataatttgaaaaaatcacataa 14674300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 19429411 - 19429463
Alignment:
Q  264 cggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| ||||| |||||||| ||||| ||||||| ||||||||||||    
T  19429411 cggacacgacattgacatgccgacaatgttaataatttgagaaaatcacataa 19429463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 21522694 - 21522781
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac------gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||||| ||||||||||      |||||||||||||||||| || ||| ||||| ||||||| ||||||    
T  21522694 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataa 21522781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 21533260 - 21533347
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac------gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||||| ||||||||||      |||||||||||||||||| || ||| ||||| ||||||| ||||||    
T  21533260 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataa 21533347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 13287509 - 13287427
Alignment:
Q  240 aagcacggatccagacacggacaccggacacg------acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| | |||||||||||||||||||      ||||| ||||| ||||| || ||| ||||||||||||||||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataa 13287427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 8419985 - 8420058
Alignment:
Q  238 tgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||| | |||||||||||||||||      ||||||||||||| || ||| ||||||||||||| ||||||    
T  8419985 tgaagcacggatacggacacggacaccggacaa-----tgacacgccgacatagctaataatttgaaaaaataacataa 8420058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 16942018 - 16941973
Alignment:
Q  239 gaagcacggatccagacacggacaccggacacgacactgacacgccg 285  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||    
T  16942018 gaagcacggatacagacacggaca-cggacacgacacggacacgccg 16941973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 23016106 - 23016060
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| | ||||||||| ||||||||||||| |||||    
T  23016106 ctatgaagcacggatacggacacggactccggacacgacacggacac 23016060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 20683325 - 20683370
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgaca 280  Q
    |||| |||||||||| | ||||||||||||||||||||||| ||||    
T  20683325 ctataaagcacggatacggacacggacaccggacacgacacggaca 20683370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 21191129 - 21191084
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| ||||||| || ||| ||||||||||||||||||||    
T  21191129 gacactgacatgccgacacagctaataatttgaaaaaatcacataa 21191084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 32676929 - 32676876
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgaca 288  Q
    |||||||||| |||  | |||||||||||| ||||||||||||||||| |||||    
T  32676929 ctatgaagcatggactccgacacggacacctgacacgacactgacacgtcgaca 32676876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 34276801 - 34276846
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgaca 280  Q
    ||||||||||||||| | |||||||| |||||||||||||| ||||    
T  34276801 ctatgaagcacggatacggacacggataccggacacgacacagaca 34276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 39698527 - 39698572
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||| |||| || ||| ||||||||||||||||||||    
T  39698527 gacactgacacgctgacacagctaataatttgaaaaaatcacataa 39698572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 6247609 - 6247653
Alignment:
Q  272 acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||    
T  6247609 acactgacacgccgacacatctaataatttgaaaaaatcacataa 6247653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 22013364 - 22013445
Alignment:
Q  235 ctatgaagcacggatccagacac-ggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||| ||||||  |||||| ||||||||||||||||| || ||| |||||| |||||| ||||||    
T  22013364 ctatgaagcacggatacggacaccggacac--gacacggacactgacacgccgacacagctaataatttggaaaaattacataa 22013445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 36642835 - 36642799
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaa 307  Q
    |||||||||||||||||| |||||| |||||||||||    
T  36642835 gacactgacacgccgacacagttaataatttgaaaaa 36642799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 46626 - 46713
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | |||||||||| ||||||||||||      ||||||||||||| |||||| ||||||||||||||||||||    
T  46626 ctatgaagcacggatacggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataa 46713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 25481846 - 25481933
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac------gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| |||||||||||| |||||||      |||| ||||||||||||| || ||| ||||||||||||||||||||    
T  25481846 ctatgaagcacggatacagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataa 25481933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 9778452 - 9778531
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||   |||| || | | ||||||||||||||||||||    
T  9778452 ctatgaagcacggatacggacacggacaccggacacgacacggacact--gacacagctgataatttgaaaaaatcacataa 9778531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 1885519 - 1885560
Alignment:
Q  237 atgaagcacggatccagacacggacaccggacacgacactga 278  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  1885519 atgaagcacggatacagacacggacaccggacacgacactga 1885560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 17851374 - 17851414
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgaca 274  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  17851374 actatgaagcacggatacagacacggacaccggacacgaca 17851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 5409952 - 5409864
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacac------gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||| ||||||| ||||||||| ||      ||||||||||||| || | || ||| ||||||||||||||||||||    
T  5409952 actatgaagcacggatacagacacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacataa 5409864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 25822605 - 25822678
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaa 308  Q
    ||||||| ||||||| |||||| |||||||||| ||||||  |||||||||||| |  ||| ||||||||||||    
T  25822605 ctatgaaacacggatacagacatggacaccggatacgacatagacacgccgacacaactaataatttgaaaaaa 25822678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 7438693 - 7438737
Alignment:
Q  272 acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  7438693 acactgacatgccgacacagttaataatttgaaaaaatcacataa 7438737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 24105629 - 24105702
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaat 309  Q
    ||||||||||||||| | || ||||||||  |||||| ||||||||||||||||| || ||| |||||||||||||    
T  24105629 ctatgaagcacggatacggatacggacac--gacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 8160374 - 8160420
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||| |||||||| | ||||||||||||| |||||||||||||||    
T  8160374 ctatgatgcacggatactgacacggacaccgaacacgacactgacac 8160420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 11061189 - 11061104
Alignment:
Q  237 atgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||| | |||||||||| |||| |||||||      |||||| |||||| || ||| ||||||||||||||||||||    
T  11061189 atgaagcacggatacggacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataa 11061104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 26329497 - 26329451
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||||||| || ||||||||||||| ||||||||||| |||||    
T  26329497 ctatgaagcacgaatacagacacggacactggacacgacacagacac 26329451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 9408407 - 9408362
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||    
T  9408407 gacactgacacaccgacacaattaataatttgaaaaaatcacataa 9408362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 11722171 - 11722126
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||||||  | ||||||||||| ||||||||||||    
T  11722171 gacactgacacgccgacaccgctaacaatttgagaaaatcacataa 11722126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 24339628 - 24339673
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||| ||||||||||||| || ||| ||||||||||||||||||||    
T  24339628 gacattgacacgccgacacagctaataatttgaaaaaatcacataa 24339673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 35861903 - 35861948
Alignment:
Q  236 tatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||    
T  35861903 tatgaagcacggatacggacgcggacaccggacacgacacagacac 35861948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 42720994 - 42720918
Alignment:
Q  240 aagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| | ||||| |||| | |||| ||||||||||||  ||||  | ||| ||||||||||||||||||||    
T  42720994 aagcacggatacggacacagacatcagacatgacactgacacgttgacaccgctaataatttgaaaaaatcacataa 42720918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 43027578 - 43027497
Alignment:
Q  235 ctatgaagcacggatccagacac-ggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | ||||| ||||||  |||||| ||||||||||| ||||  || ||| ||||||||||||||||||||    
T  43027578 ctatgaagcacggatgcggacactggacac--gacacggacactgacacggcgacccagctaataatttgaaaaaatcacataa 43027497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23293101 - 23293014
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| ||| | |||||||||||||||||||||||      ||||||||||||| || ||| ||||||||||||||||||||    
T  23293101 ctatgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataa 23293014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 15029715 - 15029796
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||| |||| | |||| ||| |||||||||||||||||||||| ||||  | ||| |||||||||| |||||||||    
T  15029715 ctatgaagcagggatacggacatggagaccggacacgacactgacacgcagacactgctaataatttgaaaatatcacataa 15029796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 42640476 - 42640549
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaa 308  Q
    ||||||||||||||| | ||||||||||  |||||| |||| |||||||||||| || | | ||||||||||||    
T  42640476 ctatgaagcacggatacggacacggacattggacacaacacggacacgccgacacagctgataatttgaaaaaa 42640549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 24343451 - 24343491
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  24343451 ctatgaagcacggacacagacacggacaccggacacgacac 24343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 12628693 - 12628617
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcac 312  Q
    ||||||||||||||| | || |||||||   ||||| |||||||||| ||||||| |||||| ||||||||||||||||    
T  12628693 ctatgaagcacggatacggatacggacat--gacactgacactgacatgccgacacagttaataatttgaaaaaatcac 12628617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 37203222 - 37203269
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacg 282  Q
    |||||||||||||||   ||||||||||||||||||||||| ||||||    
T  37203222 ctatgaagcacggatatggacacggacaccggacacgacacagacacg 37203269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 4157102 - 4157148
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||| | |||||||||||| |||||||||| |||||    
T  4157102 ctatgaagcacggatacggacacggacaccagacacgacacagacac 4157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 15835725 - 15835675
Alignment:
Q  258 ggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaa 308  Q
    |||||||||||||||||| ||||| ||||||  ||||| ||||||||||||    
T  15835725 ggacaccggacacgacacagacacaccgacactgttaataatttgaaaaaa 15835675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 28720827 - 28720898
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg-acactgacacgccgacaaagttaacaatttgaaaaa 307  Q
    |||||||||||| || |||||||||||||  |||||| ||||||||| ||||||| || ||| |||||||||||    
T  28720827 ctatgaagcacgtatacagacacggacac--gacacgaacactgacatgccgacacagctaataatttgaaaaa 28720898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 11596425 - 11596380
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||| ||||| |||||| ||| ||||||||||||||||||||    
T  11596425 gacactgatacgccaacaaagctaataatttgaaaaaatcacataa 11596380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 50280863 - 50280912
Alignment:
Q  267 acacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||| |||||||||||| || ||| ||||||||||| ||||||||    
T  50280863 acacgacacggacacgccgacacagctaataatttgaaaaattcacataa 50280912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 3144753 - 3144713
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacac 275  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  3144753 ctatgaagcacggacacagacacggacaccgggcacgacac 3144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 7251715 - 7251663
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaa 308  Q
    ||||||||||||||| |||| || ||||||||| || ||| ||||||||||||    
T  7251715 acggacaccggacacaacacagaaacgccgacacagctaataatttgaaaaaa 7251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 130425 - 130513
Alignment:
Q  234 actatgaagcacggatccagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||| |||| | |||||||||||||||||||||||      ||||| ||||||| |||||| | ||||||||||||||||||    
T  130425 actatgaagcatggatacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataa 130513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 71694 - 71746
Alignment:
Q  256 acggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaa 308  Q
    ||||||| ||||||||||||||||||||||||| || ||| ||||||||||||    
T  71694 acggacatcggacacgacactgacacgccgacacagctaataatttgaaaaaa 71746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 8742 - 8824
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac------gacactgacacgccgacaaagttaacaatttgaaaaaatca 311  Q
    |||||||||| |||| | ||||||||||||||||||      |||||||||||||||||| || ||| |||||||||||||||    
T  8742 ctatgaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatca 8824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 8829 - 8783
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacac 281  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  8829 ctatgaagcacggacacatacacggacaccggacacgacactgacac 8783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 51797 - 51842
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||    
T  51797 gacactgacacgccgacacagctaataatttgaaaaaatcacataa 51842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 20132 - 20203
Alignment:
Q  251 cagacacggacaccggacacgacac------tgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||| ||||||||||||||||||||      ||||||||||||| || ||| ||||||||||||||||||||    
T  20132 cagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataa 20203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 225383 - 225296
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacg------acactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||| ||||||  |||||||||||||||||||||      ||||||||||||||||| || ||| ||||||| ||||| ||||||    
T  225383 ctatgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataa 225296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 23371 - 23451
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacac-gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    ||||||||||||||| | |||||||||||  ||||| |||||||||||||||||| || ||| || |  ||||||||||||||    
T  23371 ctatgaagcacggatacggacacggacac--gacacagacactgacacgccgacacagataataactcaaaaaaatcacataa 23451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 9842 - 9881
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgaca 274  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  9842 ctatgaagcacggatacggacacggacaccggacacgaca 9881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 33447 - 33391
Alignment:
Q  258 ggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||  |||||||||||| || ||| ||||||||||||| ||||||    
T  33447 ggacaccggacacgaca--gacacgccgacacagctaataatttgaaaaaataacataa 33391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 3262 - 3300
Alignment:
Q  237 atgaagcacggatccagacacggacaccggacacgacac 275  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  3262 atgaagcacggatatagacacggacaccggacacgacac 3300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 1594 - 1675
Alignment:
Q  235 ctatgaagcacggatccagacacggacaccggacacgacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||| |||||||||| || || | |||||| |||| ||||| ||||||||||||  ||||| ||||||| ||||||| ||||    
T  1594 ctattaagcacggatacaaactccgacaccagacatgacacagacacgccgacaccgttaataatttgagaaaatcatataa 1675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 241580 - 241625
Alignment:
Q  271 gacactgacacgccgacaaagttaacaatttgaaaaaatcacataa 316  Q
    |||||||||||||||||| || ||| |||||| |||||||||||||    
T  241580 gacactgacacgccgacacagctaataatttggaaaaatcacataa 241625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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