View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15373_low_11 (Length: 299)
Name: NF15373_low_11
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15373_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 30315305 - 30315031
Alignment:
| Q |
7 |
gaagcaaaggagtttcatgttggtggcaaagatggttgggtcgtgaatccttctgaagactacaatcagtgggctcgaacacatagatttcgagtcaatg |
106 |
Q |
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| T |
30315305 |
gaagcaaaggagtttcatgttggtggcaaagatggttgggtcgtgaatccttctgaagactacaatcagtgggctcgaacacataggtttcgagtcaatg |
30315206 |
T |
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| Q |
107 |
acactctccgtgagtccaatattcattgttaatccccaacattacaatcattttacgagtattatttattattatatactcttttaataacttgtaacgt |
206 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315205 |
acactctccgtgagtccaat--tcattgttaatcctcaacattacaatcattttacgagtattatttattattatatactcttttaataacttgtaacgt |
30315108 |
T |
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| Q |
207 |
tgttattattttgaaaaatgctgcagatttcaagtacgttaaagggaatgattcggttcttgtggtgaagaaagaag |
283 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315107 |
tgtttttattttgaaaaatgttgcagatttcaagtacgttaaagggaatgattcggttcttgtggtgaagaaagaag |
30315031 |
T |
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