View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15373_low_13 (Length: 262)
Name: NF15373_low_13
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15373_low_13 |
 | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 8586808 - 8586960
Alignment:
| Q |
19 |
aatatagcatagcaaaatgagaaaaagttataattttaatatggtagtgcagaatgtgatctaaaacaccaaaattcctgttgacaacaagtggaaagac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8586808 |
aatatagcatagcaaaatgagaaaaagtaataattttaatatggtagtgcagaatgtgatctaaaacaccaaaattccttttgacaacaagtggaaagac |
8586907 |
T |
|
| Q |
119 |
attcaatttatacaataataatcttaaccacttcttcctaacaatattgaatt |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8586908 |
attcaatttatacaataataatcttaaccacttcttcctaacagtattgaatt |
8586960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 8593409 - 8593257
Alignment:
| Q |
19 |
aatatagcatagcaaaatgagaaaaagttataattttaatatggtagtgcagaatgtgatctaaaacaccaaaattcctgttgacaacaagtggaaagac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8593409 |
aatatagcatagcaaaatgagaaaaagtaataattttaatatggtagtgcagaatgtgatctaaaacaccaaaattccttttgacaacaagtggaaagac |
8593310 |
T |
|
| Q |
119 |
attcaatttatacaataataatcttaaccacttcttcctaacaatattgaatt |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8593309 |
attcaatttatacaataataatcttaaccacttcttcctaacagtattgaatt |
8593257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 8468586 - 8468706
Alignment:
| Q |
54 |
ttaatatggtagtgcagaatgtgat---ctaaaacaccaaaattcctgttgacaacaagtggaaagacattcaatttatacaataataatcttaaccact |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
8468586 |
ttaatatggtagtgcagaatgtgatgatctaaaacaccaaaattccttttgacaacaagtggaaatacattcaatttatacaataataatcttaatcact |
8468685 |
T |
|
| Q |
151 |
tcttcctaacaatattgaatt |
171 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
8468686 |
tcttcctaacaatattaaatt |
8468706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 112 - 54
Alignment:
| Q |
76 |
gatctaaaacaccaaaattcctgttgacaacaa-gtggaaagacattcaatttatacaa |
133 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
112 |
gatctaaaacaccaaaaatccctttgacaacaaaggggaaagacattcaatttatacaa |
54 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University