View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15373_low_8 (Length: 327)
Name: NF15373_low_8
Description: NF15373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15373_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 2617178 - 2617454
Alignment:
| Q |
36 |
taaccttcccctgaggttttagtaaataacatagacaccccctctagttttaaacaaagcaattgcctcccttgggttaacaccgttagttatctatcat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2617178 |
taaccttcccctgaggttttagtaaataacatagagaccccctctagttttaaacaaagcaattgcctaccttgggttaacaccgttagttatctatcat |
2617277 |
T |
|
| Q |
136 |
taaaaagaaatacaaatgacatttccatcttgttcttgtattctccttatgctaattccgaccatgtctagttttttgctttctcatgaaatcaacatcg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2617278 |
taaaaagaaatacaaatgacatttccatcttgttcttgtattctccttatgctaattccgaccatgtctagttttttgctttctcatgaaatcaacatcg |
2617377 |
T |
|
| Q |
236 |
attccttgttcttttggatgtatacttttatggcttttccattgtaaacctgcaactttccttgctcatttactatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2617378 |
attccttgttcttttggatgtatactgttatggcttttccattgtaaacctgcaactttccttgctcatttactatt |
2617454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 34466701 - 34466410
Alignment:
| Q |
23 |
gggaaaattgcgctaaccttcccctgaggttttagtaaataacatagacaccccctctagttttaaacaaagcaattgcctcccttgggttaacaccgtt |
122 |
Q |
| |
|
||||||||||| ||||| | || ||||||||||| ||||||||||||| |||| || |||||||||||||||||||| |||||||| ||||||||| || |
|
|
| T |
34466701 |
gggaaaattgcactaacat-cctctgaggttttactaaataacatagagaccctctatagttttaaacaaagcaattacctcccttaggttaacactgta |
34466603 |
T |
|
| Q |
123 |
agttatctatcattaa-aaagaaatacaaatgacatttccatcttgttcttgtattctccttatgct---aattccgaccatgtctagttttttgctttc |
218 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||| ||| |||| ||||||||||||| | |||||| ||||||| ||| ||| | ||||| |
|
|
| T |
34466602 |
agttatctatcattaataaagaaacacaaatgacatttccagcttattctggtattctccttattatgtcaattccaaccatgtttagctttcttctttc |
34466503 |
T |
|
| Q |
219 |
tcatgaaatcaacatcgattccttgttcttttggatgtatacttttatggcttttccattgtaaacctgcaactttccttgctcatttactatt |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||| ||||||||||||| |||| |
|
|
| T |
34466502 |
tcatgaaatcaacgtcgattccttgttcttttggatgtatatttttatggcttttccact-ttaacctgcaacttcccttgctcatttattatt |
34466410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 26179688 - 26179640
Alignment:
| Q |
42 |
tcccctgaggttttagtaaataacatagacaccccctctagttttaaac |
90 |
Q |
| |
|
|||| ||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
26179688 |
tcccttgaggttttcttaaataacacaaacaccccctctagttttaaac |
26179640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 10351496 - 10351408
Alignment:
| Q |
217 |
tctcatgaaatcaacatcgattccttgttcttttggatgtatacttttatggcttttccattgtaaacctgcaactttccttgctcattt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
10351496 |
tctcatgaaatcaacatcgattccttgttcttttgaatgtatacttttatggctttttcactgt-aacctgcaacttttcttgctcattt |
10351408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 20291153 - 20291198
Alignment:
| Q |
42 |
tcccctgaggttttagtaaataacatagacaccccctctagtttta |
87 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
20291153 |
tcccctgaggttttcttaaataacacaaacaccccctctagtttta |
20291198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 25456558 - 25456518
Alignment:
| Q |
49 |
aggttttagtaaataacatagacaccccctctagttttaaa |
89 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
25456558 |
aggtttcagtaaataacaaagacaccccctctaattttaaa |
25456518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University