View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_high_1 (Length: 611)
Name: NF15374_high_1
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 7 - 611
Target Start/End: Original strand, 46259900 - 46260504
Alignment:
| Q |
7 |
tcgaagaaaataattcaaacacataaacaaggttaatcatagaggaagtaaacagatacctcatcttcaatttcgttttgtagttgtgtcttggtagctt |
106 |
Q |
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| T |
46259900 |
tcgaataaaataattcaaacacataaacaaggttaatcatagaggaagtaaacagatacctcatctgcaatttcgttttgtagttgtgtcttggtagctt |
46259999 |
T |
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| Q |
107 |
cgagcttttcaatttcatctctatagttaaacataaaattagtggacagagaaacatgaagaaactaatagcagcattgtacaccctccatatcaaatca |
206 |
Q |
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| T |
46260000 |
cgagcttttcaatttcatctctatagttaaacataaaattagtggacagagaaacatgaagaaactaatagcagcattgtacaccctccatatcaaatca |
46260099 |
T |
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| Q |
207 |
ctgctaggtcttgtcgacagttagaaccattaaggcagggtaaggacaacagaaattgcatcctctactgctgcagtatggtgctgcagctgtagggacc |
306 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46260100 |
ctgctaggtcttgttgacatttagaaccattaaggcagggtaaggacaacagaaattgcatcctctactgctgcagtatggtgctgcagctgtagggacc |
46260199 |
T |
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| Q |
307 |
gttagagttagagagaaattttacttctttcagtttatctctagtattgttcggtgaataaaaaacattttacaactaatccatgttcaccttgggtaat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46260200 |
attagagttagagagaaattttacttctttcagtttatctctagtattgttcggtgaataaaaaacattttacaactaatccatgttcaccttgggtaat |
46260299 |
T |
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| Q |
407 |
agtatcaagaaacaacttgaggcttagagaattacacaaagttgatagatgtcaattacttactcctcttcaataggaaaatcaatggattccatggaga |
506 |
Q |
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| T |
46260300 |
agtatcaagaaacaacttgaggcttagagaattacacaaagttgatagatgtcaattacttactcctcttcaataggaaaatcaatggattccatggaga |
46260399 |
T |
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| Q |
507 |
ggttcttccttgcctagataaaaaatgaagacataaaaccactaactctttagtacataatcaatttagctctcaaagaaagtaggaaagaaacattaat |
606 |
Q |
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| T |
46260400 |
ggttcttccttgcctagataaaaaatgaagacataaaaccactaactctttagtacataatcaatttagctctcaaagaaagtagaaaagaaacattaat |
46260499 |
T |
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| Q |
607 |
ggcat |
611 |
Q |
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| T |
46260500 |
ggcat |
46260504 |
T |
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