View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15374_high_6 (Length: 269)

Name: NF15374_high_6
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15374_high_6
NF15374_high_6
[»] chr6 (37 HSPs)
chr6 (1-259)||(34595171-34595429)
chr6 (83-259)||(34739271-34739447)
chr6 (83-251)||(34622996-34623164)
chr6 (1-83)||(28152135-28152217)
chr6 (3-83)||(4877982-4878061)
chr6 (1-80)||(32978842-32978921)
chr6 (1-83)||(28715332-28715414)
chr6 (1-82)||(17841530-17841611)
chr6 (12-85)||(5970035-5970108)
chr6 (12-85)||(8714039-8714112)
chr6 (12-83)||(8365448-8365519)
chr6 (12-83)||(10339054-10339125)
chr6 (12-83)||(16766756-16766827)
chr6 (1-83)||(6898221-6898303)
chr6 (18-83)||(17327590-17327655)
chr6 (1-88)||(8776903-8776995)
chr6 (1-84)||(7378016-7378099)
chr6 (49-83)||(5732474-5732508)
chr6 (12-85)||(9107297-9107370)
chr6 (6-83)||(24645523-24645600)
chr6 (29-82)||(31384995-31385048)
chr6 (37-82)||(31959223-31959268)
chr6 (12-83)||(7248417-7248488)
chr6 (37-80)||(8389411-8389454)
chr6 (37-80)||(9025448-9025491)
chr6 (49-84)||(9911481-9911516)
chr6 (1-71)||(1315969-1316039)
chr6 (49-83)||(7723199-7723233)
chr6 (37-83)||(7938173-7938219)
chr6 (1-83)||(7977770-7977852)
chr6 (49-83)||(9629479-9629513)
chr6 (1-71)||(16833345-16833415)
chr6 (49-86)||(10842618-10842655)
chr6 (12-84)||(3209447-3209519)
chr6 (1-81)||(7265535-7265615)
chr6 (37-85)||(7625189-7625237)
chr6 (12-84)||(9522950-9523022)
[»] chr2 (31 HSPs)
chr2 (1-84)||(37559014-37559097)
chr2 (1-81)||(2438661-2438741)
chr2 (1-83)||(18840953-18841035)
chr2 (1-83)||(38117099-38117181)
chr2 (1-83)||(15972910-15972992)
chr2 (1-82)||(28596506-28596587)
chr2 (13-85)||(26769571-26769643)
chr2 (12-83)||(37419802-37419873)
chr2 (1-70)||(12224260-12224329)
chr2 (13-81)||(19942314-19942382)
chr2 (1-72)||(5040771-5040842)
chr2 (1-78)||(27460074-27460148)
chr2 (12-83)||(35056927-35056998)
chr2 (19-81)||(15657930-15657992)
chr2 (12-84)||(24009343-24009415)
chr2 (49-83)||(19536361-19536395)
chr2 (13-83)||(27084318-27084388)
chr2 (30-83)||(42511322-42511375)
chr2 (40-84)||(11223792-11223836)
chr2 (1-72)||(21624304-21624370)
chr2 (12-83)||(30717459-30717530)
chr2 (37-83)||(29176368-29176414)
chr2 (30-71)||(14996171-14996212)
chr2 (37-78)||(23058389-23058430)
chr2 (12-85)||(32749752-32749825)
chr2 (18-83)||(41843500-41843565)
chr2 (1-61)||(5367229-5367289)
chr2 (40-84)||(10535684-10535728)
chr2 (49-81)||(23354926-23354958)
chr2 (37-81)||(42832234-42832278)
chr2 (39-83)||(44635568-44635612)
[»] chr4 (42 HSPs)
chr4 (3-83)||(23292926-23293006)
chr4 (1-84)||(21945540-21945623)
chr4 (1-83)||(28964188-28964270)
chr4 (1-86)||(49431063-49431148)
chr4 (1-84)||(34306743-34306826)
chr4 (1-83)||(12895214-12895296)
chr4 (1-83)||(16073431-16073513)
chr4 (4-81)||(4157476-4157553)
chr4 (1-86)||(715542-715629)
chr4 (1-86)||(752868-752955)
chr4 (1-85)||(42640566-42640645)
chr4 (12-83)||(53381530-53381602)
chr4 (12-82)||(30982808-30982878)
chr4 (1-83)||(35157925-35158007)
chr4 (1-80)||(28084559-28084640)
chr4 (1-85)||(2361913-2361997)
chr4 (18-82)||(3947702-3947766)
chr4 (30-81)||(7424724-7424774)
chr4 (1-83)||(8423658-8423740)
chr4 (1-83)||(35161073-35161155)
chr4 (4-81)||(4157189-4157266)
chr4 (40-85)||(36635406-36635451)
chr4 (37-85)||(24343586-24343634)
chr4 (37-85)||(29205541-29205589)
chr4 (37-85)||(37203325-37203373)
chr4 (39-82)||(4383442-4383484)
chr4 (44-83)||(5775304-5775343)
chr4 (11-82)||(12323967-12324038)
chr4 (12-83)||(19482727-19482798)
chr4 (40-83)||(25950472-25950515)
chr4 (40-83)||(40784029-40784072)
chr4 (49-83)||(3064868-3064902)
chr4 (37-83)||(11596297-11596343)
chr4 (1-79)||(12797282-12797360)
chr4 (37-83)||(18513175-18513221)
chr4 (12-70)||(21873315-21873373)
chr4 (12-70)||(21929176-21929234)
chr4 (12-78)||(30838269-30838335)
chr4 (49-86)||(10499224-10499261)
chr4 (32-81)||(22440559-22440608)
chr4 (1-81)||(482185-482260)
chr4 (1-53)||(29205481-29205533)
[»] chr3 (36 HSPs)
chr3 (1-83)||(55401112-55401194)
chr3 (1-83)||(40993275-40993357)
chr3 (1-86)||(20503502-20503587)
chr3 (1-83)||(7171538-7171620)
chr3 (1-68)||(10954989-10955056)
chr3 (1-83)||(27505283-27505370)
chr3 (1-81)||(28918038-28918120)
chr3 (1-83)||(35222975-35223057)
chr3 (12-81)||(4987222-4987291)
chr3 (19-83)||(34185052-34185116)
chr3 (12-83)||(41961579-41961650)
chr3 (1-81)||(25775546-25775624)
chr3 (42-86)||(3730105-3730149)
chr3 (32-83)||(40052380-40052431)
chr3 (37-83)||(3163971-3164017)
chr3 (37-78)||(1509640-1509681)
chr3 (37-86)||(11610582-11610631)
chr3 (29-82)||(15999951-16000004)
chr3 (1-81)||(24204983-24205063)
chr3 (1-82)||(8789489-8789572)
chr3 (49-85)||(8842414-8842450)
chr3 (12-84)||(11252024-11252096)
chr3 (37-72)||(1509607-1509642)
chr3 (12-83)||(8039764-8039835)
chr3 (40-83)||(14979225-14979268)
chr3 (13-84)||(18426998-18427069)
chr3 (49-83)||(4990912-4990946)
chr3 (29-83)||(5407199-5407253)
chr3 (1-83)||(13845465-13845547)
chr3 (37-83)||(16789585-16789631)
chr3 (1-83)||(26492145-26492227)
chr3 (40-82)||(34910393-34910435)
chr3 (37-83)||(49651716-49651762)
chr3 (39-83)||(11658871-11658915)
chr3 (18-82)||(14216957-14217021)
chr3 (18-82)||(14223086-14223150)
[»] chr1 (41 HSPs)
chr1 (1-83)||(22515827-22515909)
chr1 (1-82)||(40258874-40258955)
chr1 (1-81)||(42359391-42359471)
chr1 (1-83)||(37598868-37598950)
chr1 (1-83)||(46348323-46348405)
chr1 (1-83)||(18337366-18337448)
chr1 (1-83)||(51410062-51410144)
chr1 (12-83)||(40917808-40917879)
chr1 (1-83)||(1815294-1815376)
chr1 (2-86)||(1704932-1705013)
chr1 (18-81)||(1486646-1486709)
chr1 (12-83)||(9828103-9828174)
chr1 (40-83)||(27965940-27965983)
chr1 (1-84)||(38078600-38078683)
chr1 (12-83)||(47989556-47989627)
chr1 (1-82)||(5927281-5927362)
chr1 (1-70)||(18190061-18190130)
chr1 (20-83)||(6427531-6427594)
chr1 (16-83)||(18556385-18556452)
chr1 (12-83)||(31694639-31694710)
chr1 (12-83)||(32461393-32461464)
chr1 (41-83)||(113370-113412)
chr1 (1-83)||(5898206-5898288)
chr1 (37-83)||(21365992-21366038)
chr1 (37-83)||(29144320-29144366)
chr1 (37-83)||(46940748-46940794)
chr1 (37-86)||(5944367-5944416)
chr1 (37-81)||(16297223-16297267)
chr1 (37-85)||(17831460-17831508)
chr1 (39-83)||(22881567-22881611)
chr1 (40-88)||(22947806-22947854)
chr1 (1-69)||(40181908-40181976)
chr1 (32-83)||(7918154-7918205)
chr1 (12-83)||(25934675-25934746)
chr1 (56-86)||(6936331-6936361)
chr1 (37-83)||(16812629-16812675)
chr1 (49-83)||(35702542-35702576)
chr1 (40-85)||(32899967-32900012)
chr1 (38-83)||(38075909-38075954)
chr1 (29-81)||(17778618-17778670)
chr1 (39-83)||(36878541-36878585)
[»] scaffold0652 (1 HSPs)
scaffold0652 (1-82)||(403-484)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-85)||(8835-8919)
[»] chr5 (33 HSPs)
chr5 (1-81)||(21190998-21191078)
chr5 (1-83)||(21576685-21576767)
chr5 (1-84)||(42893397-42893480)
chr5 (1-83)||(43564918-43565000)
chr5 (12-83)||(39698600-39698671)
chr5 (1-83)||(28588614-28588696)
chr5 (30-83)||(14873588-14873641)
chr5 (1-84)||(31084360-31084448)
chr5 (12-80)||(39268541-39268609)
chr5 (12-71)||(15382533-15382592)
chr5 (37-84)||(19820327-19820374)
chr5 (12-83)||(21522809-21522880)
chr5 (12-83)||(21533375-21533446)
chr5 (12-82)||(21542089-21542159)
chr5 (31-72)||(17088358-17088399)
chr5 (49-85)||(22423762-22423798)
chr5 (31-83)||(35017110-35017162)
chr5 (1-84)||(4105296-4105379)
chr5 (12-83)||(7677764-7677835)
chr5 (44-83)||(39758340-39758379)
chr5 (18-81)||(43001859-43001922)
chr5 (49-83)||(10298635-10298669)
chr5 (49-83)||(17123132-17123166)
chr5 (1-83)||(27932272-27932354)
chr5 (12-86)||(32766869-32766943)
chr5 (37-83)||(38464313-38464359)
chr5 (46-83)||(6770618-6770655)
chr5 (38-83)||(15086552-15086597)
chr5 (18-83)||(30098391-30098456)
chr5 (41-81)||(16203746-16203786)
chr5 (31-83)||(17593663-17593715)
chr5 (1-81)||(30502330-30502410)
chr5 (1-81)||(30542673-30542753)
[»] chr7 (31 HSPs)
chr7 (1-84)||(21880189-21880272)
chr7 (12-87)||(24339701-24339776)
chr7 (1-83)||(598245-598327)
chr7 (1-83)||(15680846-15680928)
chr7 (1-83)||(21864845-21864927)
chr7 (12-82)||(32287404-32287474)
chr7 (18-83)||(5409771-5409836)
chr7 (1-83)||(43027404-43027491)
chr7 (30-83)||(9778571-9778624)
chr7 (20-83)||(17852056-17852119)
chr7 (37-83)||(6490789-6490835)
chr7 (1-78)||(13770728-13770810)
chr7 (1-83)||(18212973-18213055)
chr7 (1-83)||(24105715-24105797)
chr7 (29-83)||(29763129-29763183)
chr7 (18-83)||(32093954-32094020)
chr7 (1-79)||(40287306-40287379)
chr7 (18-83)||(1433513-1433578)
chr7 (12-81)||(26033392-26033461)
chr7 (31-83)||(14729770-14729822)
chr7 (1-83)||(1401062-1401142)
chr7 (30-81)||(22868113-22868164)
chr7 (4-83)||(33994252-33994331)
chr7 (49-83)||(30813882-30813916)
chr7 (12-82)||(32308179-32308249)
chr7 (49-83)||(35862036-35862070)
chr7 (1-82)||(7197238-7197319)
chr7 (39-80)||(8842282-8842323)
chr7 (1-82)||(20549828-20549909)
chr7 (1-61)||(8234183-8234243)
chr7 (29-81)||(29998974-29999026)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-86)||(241653-241727)
[»] chr8 (36 HSPs)
chr8 (1-79)||(5813629-5813707)
chr8 (1-83)||(36450694-36450776)
chr8 (1-81)||(926730-926810)
chr8 (1-81)||(20679337-20679417)
chr8 (11-83)||(29510233-29510305)
chr8 (12-83)||(22652035-22652106)
chr8 (1-72)||(40332228-40332299)
chr8 (12-83)||(15816058-15816129)
chr8 (1-84)||(31557033-31557116)
chr8 (18-83)||(22197671-22197736)
chr8 (1-81)||(15023199-15023279)
chr8 (12-83)||(34450961-34451032)
chr8 (1-83)||(8343009-8343086)
chr8 (29-83)||(8343392-8343446)
chr8 (37-83)||(11803343-11803389)
chr8 (1-83)||(18407756-18407838)
chr8 (29-71)||(22943301-22943343)
chr8 (38-83)||(17751730-17751775)
chr8 (38-83)||(17760717-17760762)
chr8 (13-82)||(29447040-29447109)
chr8 (12-85)||(29447503-29447576)
chr8 (1-81)||(3025588-3025668)
chr8 (44-88)||(25566910-25566954)
chr8 (1-72)||(126298-126369)
chr8 (12-83)||(3951476-3951547)
chr8 (1-71)||(4298841-4298908)
chr8 (37-84)||(8798792-8798839)
chr8 (39-86)||(13436907-13436954)
chr8 (37-83)||(4673354-4673400)
chr8 (40-82)||(24205749-24205791)
chr8 (49-83)||(31514939-31514973)
chr8 (1-82)||(43737752-43737833)
chr8 (3-79)||(4498342-4498418)
chr8 (19-83)||(6065586-6065650)
chr8 (41-81)||(16987990-16988030)
chr8 (37-81)||(44067600-44067644)
[»] scaffold0512 (1 HSPs)
scaffold0512 (1-83)||(4976-5058)
[»] scaffold0475 (1 HSPs)
scaffold0475 (1-83)||(3345-3427)
[»] scaffold0450 (1 HSPs)
scaffold0450 (12-86)||(8561-8635)
[»] scaffold0793 (1 HSPs)
scaffold0793 (1-86)||(4818-4905)
[»] scaffold0019 (1 HSPs)
scaffold0019 (12-88)||(71784-71860)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-80)||(70315-70394)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-86)||(45467-45552)
[»] scaffold0136 (1 HSPs)
scaffold0136 (12-83)||(3778-3849)
[»] scaffold0086 (1 HSPs)
scaffold0086 (12-83)||(2987-3058)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-84)||(14567-14647)
[»] scaffold0103 (1 HSPs)
scaffold0103 (41-82)||(51900-51941)
[»] scaffold0004 (1 HSPs)
scaffold0004 (17-82)||(92875-92940)
[»] scaffold0044 (1 HSPs)
scaffold0044 (12-72)||(53239-53299)
[»] scaffold0154 (1 HSPs)
scaffold0154 (12-83)||(13472-13543)
[»] scaffold0380 (1 HSPs)
scaffold0380 (29-83)||(8666-8720)
[»] scaffold0027 (1 HSPs)
scaffold0027 (49-83)||(46742-46776)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 34595171 - 34595429
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagattgacggtgagtttgt 100  Q
    ||||||||||||||||||||||||||  ||||||| || |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34595171 tgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagattgacggtgagtttgt 34595270  T
Q  101 taaaattacggtggtgttttgtgatgctccaaagtatagcttttagcaaaatcacgatgactcacggtgattctgccaatttcactgccaattcgaacag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34595271 taaaattacggtgatgttttgtgatgctccaaagtatagcttttagcaaaatcacgatgactcacggtgattctgccaatttcaccgccaattcgaacag 34595370  T
Q  201 accaaattaaacatacttatatttagtttagcttgtttcaattgtgtttctcatctgtg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34595371 accaaattaaacatacttatatttagtttagcttgtttcaattgtgtttctcatctgtg 34595429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 83 - 259
Target Start/End: Original strand, 34739271 - 34739447
Alignment:
Q  83 gattgacggtgagtttgttaaaattacggtggtgttttgtgatgctccaaagtatagcttttagcaaaatcacgatgactcacggtgattctgccaattt 182  Q
    ||||||||  |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  34739271 gattgacgacgagttcattaaaatcacggtggtgttttgtgatgctccaaagtatagcttttagcaaaatcacgatgactcgcggtgagtctgccaattt 34739370  T
Q  183 cactgccaattcgaacagaccaaattaaacatacttatatttagtttagcttgtttcaattgtgtttctcatctgtg 259  Q
    ||| |||||||| |||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  34739371 caccgccaattcaaacagaccaaatcaaacatacttttattttgtttagcttgtttgaattgtgtttctcatttgtg 34739447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 34622996 - 34623164
Alignment:
Q  83 gattgacggtgagtttgttaaaattacggtggtgttttgtgatgctccaaagtatagcttttagcaaaatcacgatgactcacggtgattctgccaattt 182  Q
    |||||||||||| |  |||||||| | ||||||||||||||||||||||||  ||||||||||| |||||||||||  ||| | ||||||||||||||||    
T  34622996 gattgacggtgaatccgttaaaatcaaggtggtgttttgtgatgctccaaaccatagcttttaggaaaatcacgatctctcgctgtgattctgccaattt 34623095  T
Q  183 cactgccaattcgaacagaccaaattaaacatacttatatttagtttagcttgtttcaattgtgtttct 251  Q
    ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34623096 caccgccaatccaaacagaccaaattaaacatacttatatttagtttagcttgtttcaattgtctttct 34623164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28152135 - 28152217
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||| ||| |||||||||||||||||| | ||||||||||    
T  28152135 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 4877982 - 4878061
Alignment:
Q  3 taattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||  ||||| | |||||||| || |||||||||||||||||||||||| ||||||||||    
T  4877982 taattacaagtgtcggtgtcggacacgacacatgtccgacacagg-acacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32978921 - 32978842
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||| ||||| ||||||| |||||||||| |||||||    
T  32978921 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28715332 - 28715414
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| | ||||||||| ||||||||||| |||| ||||| | ||||||||||    
T  28715332 tgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17841611 - 17841530
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||||||| |||||||||||  |||| || |||||||| |  |||||||||||||||||||||||| |||||||||    
T  17841611 tgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 5970108 - 5970035
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||||||||||  ||||| ||||||||| ||| ||||||| ||||||||||||| | |||||||||||||    
T  5970108 gtgtcggtgtcggacacgacacatttccgacatcgggacacgcccaatccgaggagtgactatgcttcatagat 5970035  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 8714039 - 8714112
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||||||||||  ||||| ||||||||| ||| ||||||| |||||||||||||||  ||||||||||||    
T  8714039 gtgtcggtgtcggacacgacacatttccgacatcgggacacgcccaatccgaggagtgtctttgcttcatagat 8714112  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 8365519 - 8365448
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| ||||||  ||||||| |||||||| || |||||||||||||||||||| ||| ||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 10339125 - 10339054
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||| | |||||||| || |||||||||||| ||||||||||| ||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 16766756 - 16766827
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||   |||||| ||||||||||| ||||||||||||||| || ||||| ||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6898303 - 6898221
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||  ||| ||| ||||||  ||||||||||||||| |||||| | ||||||||||    
T  6898303 tgtaattacaagtgtcggtgtcggacacgaagcgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttcatag 6898221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 17327655 - 17327590
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||  ||||||| || ||||| || |||||||||||||||||||||||| ||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8776995 - 8776903
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacg-----tttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagattga 88  Q
    ||||||||||||||| ||||||||||  ||||||     | ||||||||||  |||| ||||||||||||||||||| |||||||||| ||||    
T  8776995 tgtaattacaagtgttggtgtcggacacgacacgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcataggttga 8776903  T

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Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7378016 - 7378099
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||| | |||||||||||||||  |||| |  ||||||||||| ||||| |||||| ||| ||||||| |||||||||||    
T  7378016 tgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcataga 7378099  T

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Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 5732508 - 5732474
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||||||||||||||    
T  5732508 acacgcctaatccgaggagtgtccatgcttcatag 5732474  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 9107370 - 9107297
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||||||||||   ||  || ||||||||||| |||| |||||||||||||||| || ||||||||||||    
T  9107370 gtgtcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatagat 9107297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 24645523 - 24645600
Alignment:
Q  6 ttacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||| |||  ||||||| |||||||||   ||||| ||||||||| |||||||  ||||||||||    
T  24645523 ttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31384995 - 31385048
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||| ||| ||||||| ||||||||||||| |||||||||| |||||||||    
T  31384995 gacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttcata 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 31959223 - 31959268
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  31959223 tccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 7248417 - 7248488
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||| ||||   ||| || ||||||||||| ||||| | |||||||||||||||| ||||||||||    
T  7248417 gtgtcggtgttggacacaacatgtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcatag 7248488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 8389454 - 8389411
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||    
T  8389454 tccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 9025491 - 9025448
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||    
T  9025491 tccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 9911516 - 9911481
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||||||||||||||||| |||||||||||||    
T  9911516 acacgcctaatccgaggagtgttcatgcttcataga 9911481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1315969 - 1316039
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtc 71  Q
    |||||||||||||||||||||||| |  | || || ||||||||| | |||||||||| ||||| ||||||    
T  1315969 tgtaattacaagtgtcggtgtcgggcacgtcatgtgtccgacaccagaacacgcctaacccgagaagtgtc 1316039  T

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Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 7723233 - 7723199
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  7723233 acacgcctaatccgaggagtgtccgtgcttcatag 7723199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 7938173 - 7938219
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||  |||||||| ||||||||||||||| ||||||||||    
T  7938173 tccgacaccgagacacgcctgatccgaggagtgtccgtgcttcatag 7938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7977852 - 7977770
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||   |||  | ||||||| ||  ||||||||||||  |||||||| | ||||||||||    
T  7977852 tgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttcatag 7977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 9629479 - 9629513
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| |||||||||||||||||||||||||||||    
T  9629479 acacgtctaatccgaggagtgtccatgcttcatag 9629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16833345 - 16833415
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtc 71  Q
    |||||||||||||||||||||  |||  ||||||  ||||||||| | |||| || |||||||||||||||    
T  16833345 tgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacaccgaatccgaggagtgtc 16833415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 10842618 - 10842655
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  10842618 acacggctaatccgaggagtgtccgtgcttcatagatt 10842655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 3209447 - 3209519
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||| |||||| ||  ||||||  ||||||||| | ||||||||||||||||||||||   |||||||||||    
T  3209447 gtgtcagtgtcgaacacgacacgcgtccgacacccggacacgcctaatccgaggagtgtttgtgcttcataga 3209519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7265615 - 7265535
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| | |||||||||||||||   | || | ||||||||||| | | ||||||||||||||| |||| ||||||||    
T  7265615 tgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggagcgtccgtgcttcat 7265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 7625189 - 7625237
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||| |||||| |||||| |||||||| | ||||||||||||    
T  7625189 tccgacaccggaacacgcttaatccaaggagtgttcgtgcttcatagat 7625237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 9522950 - 9523022
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||   ||||||| ||||||||||  ||||||||||||| |  ||  |||||||||||||||    
T  9522950 gtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcctaatccaaatagcatccatgcttcataga 9523022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37559014 - 37559097
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  37559014 tgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcataga 37559097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2438741 - 2438661
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||| |||||||||||||||||||||||| ||||||||    
T  2438741 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18841035 - 18840953
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||| |||  ||||| | ||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  18841035 tgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38117181 - 38117099
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||| ||||||||||   |||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  38117181 tgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15972910 - 15972992
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| |||||| |||| |||| |||||||||| || ||||| ||||||||||    
T  15972910 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatag 15972992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28596506 - 28596587
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  | |||| ||||||||||||||||||| |||||||||    
T  28596506 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 26769571 - 26769643
Alignment:
Q  13 tgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||| ||||||  ||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 37419802 - 37419873
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||  ||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12224260 - 12224329
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgt 70  Q
    ||||||||||||||||||||||||||  || |||| |||||||| || ||||||||||||| ||||||||    
T  12224260 tgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgt 12224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 19942314 - 19942382
Alignment:
Q  13 tgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||||||  | || || || |||||||| |||||||||||||||||||||||||||||||||    
T  19942314 tgtcggtgtcggacacggcatgtgtctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5040771 - 5040842
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    ||||||||||||||||||||||||||  |||| || |||||| |||| ||||||||| ||| ||||||||||    
T  5040771 tgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtcc 5040842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 27460074 - 27460148
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgctt 78  Q
    |||||||||||| |||||||||||||   |||||| ||| ||||||| ||||| ||||||| ||||||||||||||||    
T  27460074 tgtaattacaagggtcggtgtcggac---acacgtatccaacaccgggacacgtctaatccaaggagtgtccatgctt 27460148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| |||||||| |  |||||||||||| ||||||||||| ||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 15657930 - 15657992
Alignment:
Q  19 tgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||  ||||||| |||||| |||| ||||||||| |||||||||||||||||||||||    
T  15657930 tgtcggacgcgacacgtgtccgacgccgggacacgcctagtccgaggagtgtccatgcttcat 15657992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 24009343 - 24009415
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||||||||||  ||||||| || ||||| || |||||||| |||| |||||||||| |||||||||||    
T  24009343 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcataga 24009415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 19536395 - 19536361
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||||||||||||||    
T  19536395 acacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 27084318 - 27084388
Alignment:
Q  13 tgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||  ||||||| ||| ||||||  |||||||||||| ||||||||||  ||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 42511375 - 42511322
Alignment:
Q  30 acacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||| |||||||| || ||||| |||||||||||||||||| ||||||||||    
T  42511375 acacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 11223836 - 11223792
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||| |||||||||||| ||||||||||| |||||||||||    
T  11223836 gacaccgggacacgcctaatctgaggagtgtccgtgcttcataga 11223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21624304 - 21624370
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    |||||||||||||||||||||||     ||||||| ||||||| ||| |||| |||||||| ||||||||||    
T  21624304 tgtaattacaagtgtcggtgtcg-----gacacgtgtccgacagcgggacacacctaatccaaggagtgtcc 21624370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 30717530 - 30717459
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||| ||||||||  ||||||| | |||||| || | ||||||||||| |||||||||| ||||||||||    
T  30717530 gtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 30717459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 29176414 - 29176368
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||  |||||||||||||||| ||||| ||||||||||||    
T  29176414 tccgacaccgaaacacgcctaatccgagaagtgttcatgcttcatag 29176368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 14996212 - 14996171
Alignment:
Q  30 acacgtttccgacaccggtacacgcctaatccgaggagtgtc 71  Q
    |||||| || |||||||| |||||||||||||||||||||||    
T  14996212 acacgtgtctgacaccggaacacgcctaatccgaggagtgtc 14996171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 23058430 - 23058389
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgctt 78  Q
    ||||||||||| |||||||||||||||| ||||||| |||||    
T  23058430 tccgacaccgggacacgcctaatccgagaagtgtccgtgctt 23058389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 32749825 - 32749752
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||| |||||||| ||||| || |||||||| || |||||||| |||  ||||||||||  |||||||||||    
T  32749825 gtgtcgatgtcggacgtgacatgtgtccgacactgggacacgccttatctaaggagtgtccgcgcttcatagat 32749752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 41843500 - 41843565
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||  ||||||| |||||||| || |||||| | ||||||||||||||  ||||||||||    
T  41843500 gtgtcggacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcatag 41843565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5367229 - 5367289
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatcc 61  Q
    |||||||| | |||||||||||||||  ||||| | |||||| |||| |||||||||||||    
T  5367229 tgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatcc 5367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 10535728 - 10535684
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||| | |||||||||||||||||||||| | |||||||||||    
T  10535728 gacaccaggacacgcctaatccgaggagtgttcgtgcttcataga 10535684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 23354958 - 23354926
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||||||||||||||||| ||||||||    
T  23354958 acacgcctaatccgaggagtgtccttgcttcat 23354926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 42832278 - 42832234
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||| |||| ||||||||||||| |||||||||| ||||||||    
T  42832278 tccgactccgggacacgcctaatccaaggagtgtccttgcttcat 42832234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||  |||||||||||| ||||||||||| ||||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 23293006 - 23292926
Alignment:
Q  3 taattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23293006 taattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21945540 - 21945623
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||  ||||||||||||||||||||||| ||||||| ||||    
T  21945540 tgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgaggagtgtctatgcttcttaga 21945623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28964270 - 28964188
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||| |||||||||  ||||| | |||||||| || |||||||||||||||||||||||||||||||||||    
T  28964270 tgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49431063 - 49431148
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    |||||||| |||||||||||||||||  ||||||| ||| ||||||| |||||||| ||||||||||||||||||||| |||||||    
T  49431063 tgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatagatt 49431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34306826 - 34306743
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||| ||||| ||| | |||||||||||    
T  34306826 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcataga 34306743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12895296 - 12895214
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||||||||||||  |||| || ||||||| ||| |||||||||||||||||||||| | ||||||||||    
T  12895296 tgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 16073431 - 16073513
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  || || | ||||||||    |||||||||||||||||||||||||||||||||||    
T  16073431 tgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 4157476 - 4157553
Alignment:
Q  4 aattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||||||||||||||||  ||||| | ||||||||||  | ||||||||| ||||||||||| |||||||||    
T  4157476 aattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgaggagtgtctatgcttcat 4157553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 715629 - 715542
Alignment:
Q  1 tgtaattacaagtgtcggtgtc--ggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||||||| ||||||  | ||  ||||| | |||||||| || |||||||||||||||||||||||| |||||||||||||    
T  715629 tgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagatt 715542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 752955 - 752868
Alignment:
Q  1 tgtaattacaagtgtcggtgtc--ggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||||||| ||||||  | ||  ||||| | |||||||| || |||||||||||||||||||||||| |||||||||||||    
T  752955 tgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagatt 752868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42640566 - 42640645
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||||||||||||||||||     |||| |||| |||| | |||||||||||||||||||| ||| ||||||||||||    
T  42640566 tgtaattacaagtgtcggtgtcggac-----acgtgtccggcaccaggacacgcctaatccgaggagtttccgtgcttcatagat 42640645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 53381602 - 53381530
Alignment:
Q  12 gtgtcggtgtcggact-tgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  |||| ||| ||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  53381602 gtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 30982878 - 30982808
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||| |||  ||||||| ||||||||||| ||||||||||||| | |||||||| |||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35158007 - 35157925
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| ||||||||||||| |||  ||||| | ||| ||||||| |||||| ||||||||| ||||||| ||||||||||    
T  35158007 tgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatag 35157925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28084559 - 28084640
Alignment:
Q  1 tgtaattacaagtgtcggtgtcg-gact-tgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    |||||||||||||||| |||||| | |  |||||||| |||||||| || |||||||||||||||||||||||| |||||||    
T  28084559 tgtaattacaagtgtctgtgtcgtgtcggtgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2361997 - 2361913
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||| |||||||||||||||||  ||| ||| || |||||||  |||| ||||||| || |||||||| ||||||||||||    
T  2361997 tgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcatagat 2361913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 3947766 - 3947702
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||  ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 7424724 - 7424774
Alignment:
Q  30 acacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  7424724 acacgtgtccgacaccg-tacacgcctaatccaaggagtgtccatgcttcat 7424774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8423740 - 8423658
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| || ||||||||||||||  ||||  | ||||||||||| |||||||||||| ||| ||||||| ||| ||||||    
T  8423740 tgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35161073 - 35161155
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||| || | |||||||  ||||||| ||||||||||| |||| ||||||||||  ||||||| ||||||||||    
T  35161073 tgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcatag 35161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 4157189 - 4157266
Alignment:
Q  4 aattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||||||||||||||||  ||||| | ||||||||||  | || |||||| |||||||||||  ||||||||    
T  4157189 aattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 36635406 - 36635451
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||    
T  36635406 gacaccgggacacgcctaatccgaagagtgtccgtgcttcatagat 36635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 24343586 - 24343634
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||| ||||||||| || ||||||||||| ||||||||||||    
T  24343586 tccgacaccgggacacgcctattctgaggagtgtccgtgcttcatagat 24343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 29205541 - 29205589
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||||    
T  29205541 tccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagat 29205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 37203325 - 37203373
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||||||    
T  37203325 tccgacaccgggacacgtctaatccgagaagtgtccgtgcttcatagat 37203373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 4383442 - 4383484
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  4383442 cgacaccgg-acacgcctaatccgaggagtgtccgtgcttcata 4383484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 5775343 - 5775304
Alignment:
Q  44 ccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  5775343 ccgggacacgcctaatccgaggagtgtccgtgcttcatag 5775304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 12323967 - 12324038
Alignment:
Q  11 agtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||||||||| |||||||| |  | ||| || |||| ||| ||||||||||||||| |||||||||    
T  12323967 agtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcata 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 19482727 - 19482798
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | ||||  ||||||| |||||||| || |||| ||||||||||||||||| | ||||||||||    
T  19482727 gtgtcggtattggacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 25950515 - 25950472
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||  |||| ||||||||||||||||||||||||||||||    
T  25950515 gacaccgagacacacctaatccgaggagtgtccatgcttcatag 25950472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 40784029 - 40784072
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||    
T  40784029 gacaccgggacacacctaatccgaggagtgtccgtgcttcatag 40784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 3064902 - 3064868
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  3064902 acacgcctaatccgaggagtgtccgtgcttcatag 3064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 11596343 - 11596297
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| ||| |||||||||||| ||||||||||| ||||||||||    
T  11596343 tccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12797360 - 12797282
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttc 79  Q
    ||||||||||||||||||||||||||  || || | || |||||||| ||| | |||||||||||| ||| | ||||||    
T  12797360 tgtaattacaagtgtcggtgtcggacacgatacatgtctgacaccgggacaagtctaatccgaggaatgttcgtgcttc 12797282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 18513221 - 18513175
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||| | |||||||||||| ||||||||||| ||||||||||    
T  18513221 tccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 21873373 - 21873315
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgt 70  Q
    |||| ||| |||||| |||||||| ||||||||||| ||||| ||||||| ||||||||    
T  21873373 gtgttggtctcggacgtgacacgtgtccgacaccgggacacgtctaatccaaggagtgt 21873315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 21929234 - 21929176
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgt 70  Q
    |||| ||| |||||| |||||||| ||||||||||| ||||| ||||||| ||||||||    
T  21929234 gtgttggtctcggacgtgacacgtgtccgacaccgggacacgtctaatccaaggagtgt 21929176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 30838269 - 30838335
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgctt 78  Q
    ||||| |||||||||  ||||||| |||||||||   |||||||||| ||||||||||||| |||||    
T  30838269 gtgtcagtgtcggacgcgacacgtgtccgacaccaagacacgcctaacccgaggagtgtccgtgctt 30838335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 10499261 - 10499224
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  10499261 acacgcctaatccgaggattgtccgtgcttcatagatt 10499224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 22440608 - 22440559
Alignment:
Q  32 acgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||| ||||||||  | |||||||||||||||||||||||| ||||||||    
T  22440608 acgtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 482260 - 482185
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| || |||||||||||     ||||||| || |||||| | ||||| ||||||||| |||||||||||||||||    
T  482260 tgtaattataactgtcggtgtcg-----gacacgtgtctgacacctgaacacgtctaatccgatgagtgtccatgcttcat 482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29205481 - 29205533
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacg 53  Q
    ||||||||||||||||||||| ||||  ||||| | ||||||||||| |||||    
T  29205481 tgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacacg 29205533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55401112 - 55401194
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||||||||| ||||||||||    
T  55401112 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40993357 - 40993275
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | |||||||||||||||  ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  40993357 tgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20503502 - 20503587
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||||||||||||| ||||  ||||| | || |||||||| |||||||||||||||||||||||| |||||||||||||    
T  20503502 tgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagatt 20503587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7171538 - 7171620
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||| ||||||||||  ||||||| ||||||||||  ||||||||||||| ||||||||  |||||||||||    
T  7171538 tgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatag 7171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10954989 - 10955056
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagt 68  Q
    |||||| |||||||||||||||||||  ||||||| |||||||| || ||||||||||||||||||||    
T  10954989 tgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27505283 - 27505370
Alignment:
Q  1 tgtaattacaagtgtcggtgtcg-----gacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||     |||  ||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  27505283 tgtaattacaagtgtcggtgtcgtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28918038 - 28918120
Alignment:
Q  1 tgtaattacaagtgtcggtgtcg--gacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||||||||||||||||  |||  ||||||| |||||||| || ||||||||||||| |||||||||| ||||||||    
T  28918038 tgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35222975 - 35223057
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | ||||||||||||||| |||||||| || ||||| || |||||| | ||||||||||||||| ||||||||||    
T  35222975 tgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatag 35223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 4987291 - 4987222
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||| ||||  ||||||| ||||||||||| |||||||||||||||||||||||| | ||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 34185116 - 34185052
Alignment:
Q  19 tgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||  |||| || ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  34185116 tgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 41961650 - 41961579
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| ||||||  ||||||| |||||||| || |||||||||||||||| ||||||| ||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25775546 - 25775624
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||||||||||||||||||  | |  || ||||||||| | |||||||||||||||||||||| | ||||||||    
T  25775546 tgtaattacaagtgtcggtgtcggacacgtc--gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 3730149 - 3730105
Alignment:
Q  42 caccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  3730149 caccgggacacacctaatccgaggagtgtccatgcttcatagatt 3730105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 40052380 - 40052431
Alignment:
Q  32 acgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||| ||||||||||| |||||||||||||||||||||| | ||||||||||    
T  40052380 acgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 3164017 - 3163971
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||    
T  3164017 tccgacaccgagacacgcctaattcgaggagtgtccatgcttcatag 3163971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 1509640 - 1509681
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgctt 78  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  1509640 tccgacaccggtacacgcctaatcggaggagtgtccgtgctt 1509681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 11610582 - 11610631
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||| ||| |||||||||||| ||||||||||| |||||||||||||    
T  11610582 tccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagatt 11610631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 16000004 - 15999951
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| ||| |||||    
T  16000004 gacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcata 15999951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24205063 - 24204983
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggact-tgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| |||||||| ||||||||  |||| ||| ||||||||| | ||||||||||| |||||||||||| ||||||||    
T  24205063 tgtaattataagtgtcg-tgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8789572 - 8789489
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacg--tttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||| | |||||||||||||||  |||||   | || |||||||  |||||||||||||||||||||||| |||||||||    
T  8789572 tgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 8842414 - 8842450
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8842414 acacgcctaatccgaggagtgtccgtgcttcatagat 8842450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 11252024 - 11252096
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||| |||   |||||| |||| || ||| |||||||||||||||||||||||  |||||||||||    
T  11252024 gtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcataga 11252096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 1509607 - 1509642
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    |||||||||||||||||||||||| |||||||||||    
T  1509607 tccgacaccggtacacgcctaatcggaggagtgtcc 1509642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 8039835 - 8039764
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||| ||| || | ||||||||||| |||||| |||||||| |||| ||  ||||||||||    
T  8039835 gtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcatag 8039764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 14979225 - 14979268
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||    
T  14979225 gacaccgggacacgcctaacccgaggagtgtccgtgcttcatag 14979268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 18426998 - 18427069
Alignment:
Q  13 tgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||||||||   ||||||| |||| |||||| |||| ||||||| ||||||||||| || ||||||||    
T  18426998 tgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttcataga 18427069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 4990946 - 4990912
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  4990946 acacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 5407253 - 5407199
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| |||||| || | ||||||||||||| | |||||||||||||||||||    
T  5407253 gacacgtgtccgacgccaggacacgcctaatccaaagagtgtccatgcttcatag 5407199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13845547 - 13845465
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | |||||||||||||||  || |||| || ||||| |  |||||||| |||| |||||||||| ||||||||||    
T  13845547 tgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 16789631 - 16789585
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| ||| |||| |||||||| |||||||||||||||||||||    
T  16789631 tccgacaacgggacacacctaatcctaggagtgtccatgcttcatag 16789585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26492227 - 26492145
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||| ||||||||||||  ||||| | || ||||||   ||||| |||||||||||| |||||  |||||||||    
T  26492227 tgtaattacaagtatcggtgtcggacacgacacatgtctgacaccaagacacgtctaatccgaggaatgtccgcgcttcatag 26492145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 34910393 - 34910435
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||| ||||| |||||||||||||||||| |||||||||    
T  34910393 gacaccgggacacgtctaatccgaggagtgtccgtgcttcata 34910435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 49651762 - 49651716
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| |||| ||||||||||| ||||||| ||||||||||    
T  49651762 tccgacaccgggacacacctaatccgagaagtgtccgtgcttcatag 49651716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 11658871 - 11658915
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||||||    
T  11658871 cgacaccgggacacgtctaattcgaggagtgtccatacttcatag 11658915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 14216957 - 14217021
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||  ||||||| | |||||| || |||| ||||||||||| ||||||| |||||||||    
T  14216957 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 14223086 - 14223150
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||  ||||||| | |||||| || |||| ||||||||||| ||||||| |||||||||    
T  14223086 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22515909 - 22515827
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||  |||||||||||||||||||||||| ||||||||||    
T  22515909 tgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40258955 - 40258874
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||||||||||||||| |||  ||||| | ||||||||| | ||||||||||||||||||||||||||||||||||    
T  40258955 tgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42359471 - 42359391
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||||||||||||||||||  |||  || ||||||||||| |||||||||||||||||||||||| ||||||||    
T  42359471 tgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37598868 - 37598950
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||||||||||||  ||||||| |||||||  || |||||||||||||||||||||||| ||||||||||    
T  37598868 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 46348405 - 46348323
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||  |||||||| |||||||| |||||| ||||||||||    
T  46348405 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18337366 - 18337448
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||   |||||| |||||||| || ||| |||| ||||||||||||||| ||||||||||    
T  18337366 tgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 51410062 - 51410144
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||  ||||||||||||| |||||| | | ||||||||||    
T  51410062 tgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 40917808 - 40917879
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||| ||||  ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1815294 - 1815376
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||| |||  ||||| | ||||||||||| |||||||||||| |||||||| || || |||||||    
T  1815294 tgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatag 1815376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 1705013 - 1704932
Alignment:
Q  2 gtaattacaagtgtcggtgtcggacttgaca-cgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||||||||||||||    || || ||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  1705013 gtaattacaagtgtcggtgtcg----tgtcaacgtgtccgacaccgagacacgcctaatccaaggagtgtccatgcttcatagatt 1704932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 1486709 - 1486646
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||  ||||||| ||||||||||| |||||||||||||||||||||||  ||||||||    
T  1486709 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 9828103 - 9828174
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| ||||| |||  ||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 27965983 - 27965940
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  27965983 gacaccgggacacgcctaatccgaggagtgtccatgcttcatag 27965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38078683 - 38078600
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||||||||||||||  ||||| | | | ||||| | |||||||||||||||||||| | | |||||||||||    
T  38078683 tgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcataga 38078600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 47989556 - 47989627
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||| | || |||| ||| |||||||||||||||||||||||| ||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5927362 - 5927281
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||||||||| ||||||||| |||||  | ||||||| ||  ||| |||||||| ||||||||||| |||||||||    
T  5927362 tgtaattacaagtgtcagtgtcggacatgacaaatgtccgacatcgaaacatgcctaatctgaggagtgtccgtgcttcata 5927281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18190130 - 18190061
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgt 70  Q
    ||||||||||||||||| |||| |||   |||||| ||||||||||| |||| |||||||||||||||||    
T  18190130 tgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgt 18190061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 6427531 - 6427594
Alignment:
Q  20 gtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||  ||||||| ||||||||||| |||||||||||| || |||||||| ||||||||||    
T  6427531 gtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 18556452 - 18556385
Alignment:
Q  16 cggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| |||  ||||||| |||||||| || |||||||||||||||| ||||||| ||||||||||    
T  18556452 cggtgtcagacccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 31694710 - 31694639
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||   |||| | | ||||||||| |||||||||||| ||||||||||| ||||||||||    
T  31694710 gtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttcatag 31694639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 32461464 - 32461393
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| || ||||| || ||||||||||||| || ||||||| ||||||||||    
T  32461464 gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 113370 - 113412
Alignment:
Q  41 acaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  113370 acaccgggacacgcctaatccgaggagtgcccatgcttcatag 113412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5898288 - 5898206
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | | ||||||||| |||  ||||||| ||| ||||||| ||||| |||||||||||||||||| ||||| ||||    
T  5898288 tgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttatag 5898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 21366038 - 21365992
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||||    
T  21366038 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 21365992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 29144366 - 29144320
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  29144366 tccgacaccggaacacgcctaatccgaagagtgtccgtgcttcatag 29144320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 46940794 - 46940748
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||    
T  46940794 tccgacaccggaacacgcctaatccgaggagtgttcgtgcttcatag 46940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 5944367 - 5944416
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||| | |||||||||||||||||||| | |||||||||||||    
T  5944367 tccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatagatt 5944416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 16297267 - 16297223
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||    
T  16297267 tccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 17831508 - 17831460
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||| ||||||||||||  ||||||||||||| |||||||||    
T  17831508 tccgacaccgggacacgcctaatcttaggagtgtccatgtttcatagat 17831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 22881611 - 22881567
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||    
T  22881611 cgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 22947806 - 22947854
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatagattga 88  Q
    |||||| | |||||||||||||||||||||||| |||||||||| ||||    
T  22947806 gacacctggacacgcctaatccgaggagtgtccgtgcttcataggttga 22947854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40181908 - 40181976
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtg 69  Q
    |||||||| | || ||||||||||||   |||||| ||| ||||||| |||||||||||||||||||||    
T  40181908 tgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 7918205 - 7918154
Alignment:
Q  32 acgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| |||||| | |||| ||||||||||||||||||| ||||||||||    
T  7918205 acgtttctgacaccaggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 25934675 - 25934746
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| || ||||| || | |||||| |||| |||||||||| ||||||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatag 25934746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 6936361 - 6936331
Alignment:
Q  56 taatccgaggagtgtccatgcttcatagatt 86  Q
    |||||||||||||||||||||||||||||||    
T  6936361 taatccgaggagtgtccatgcttcatagatt 6936331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 16812629 - 16812675
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| ||||| |||||||||||| ||||||||||| ||||||||||    
T  16812629 tccgaaaccgggacacgcctaatctgaggagtgtccgtgcttcatag 16812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 35702576 - 35702542
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  35702576 acacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 32899967 - 32900012
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  32899967 gacaccgggacacccctaatccgaggattgtccttgcttcatagat 32900012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 38075954 - 38075909
Alignment:
Q  38 ccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||| |||||||||||  ||||||||| ||||||||||||    
T  38075954 ccgacaccgggacacgcctaatttgaggagtgtacatgcttcatag 38075909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 17778618 - 17778670
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||| ||||||||||| ||| |||||||||||| ||||| | ||||||||    
T  17778618 gacacgtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 36878541 - 36878585
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||| || ||||||||||||| |||||||||| ||||||||||    
T  36878541 cgacacggggacacgcctaatcccaggagtgtccgtgcttcatag 36878585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 484 - 403
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  484 tgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8835 - 8919
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||| ||||||| ||| ||||||||||||    
T  8835 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatagat 8919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 21191078 - 21190998
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||||||||||||||||||   |||||| |||||| |||| |||||||||||||||||||||||| ||||||||    
T  21191078 tgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21576767 - 21576685
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||| ||||||||  ||||||| || ||||| || |||||||||||||||||||||||| ||||||||||    
T  21576767 tgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 42893397 - 42893480
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||||||||||||||||| |||   |||||| ||||||||| | |||||||||||  |||||||||||||||||||||||    
T  42893397 tgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcataga 42893480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43564918 - 43565000
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||||||||||||  |||| || |||||| |||| |||||||||||||||| ||||||| ||||||||||    
T  43564918 tgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 39698600 - 39698671
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  |||| || ||||||||||  |||||||||||||||||||||||| ||||||||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28588696 - 28588614
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | |||||||||||||||  ||||| | || |||||| | |||||| |||||||| |||||||||||||||||||    
T  28588696 tgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcatag 28588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 14873588 - 14873641
Alignment:
Q  30 acacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  14873588 acacgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31084360 - 31084448
Alignment:
Q  1 tgtaattacaagtgtcg-----gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    |||||||||||||||||     |||||||||  ||||||| |||||||| || ||| |||||||||||||||||||| || ||||||||    
T  31084360 tgtaattacaagtgtcgatgtcgtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcataga 31084448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 39268609 - 39268541
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    |||||||||| ||||  |||| || |||||||| || |||||||||||||||||||||||| |||||||    
T  39268609 gtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 15382533 - 15382592
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtc 71  Q
    |||||||||| ||||  ||||| | ||||||||||| |||||||||||||||||||||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtc 15382592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 19820374 - 19820327
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  19820374 tccgacaccgggacacgcctaatcagaggagtgtccgtgcttcataga 19820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 21522809 - 21522880
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| |||| |||||| ||||||||||||| | |||||||| ||| ||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 21533375 - 21533446
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| |||| |||||| ||||||||||||| | |||||||| ||| ||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 21542089 - 21542159
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||||||||  ||||||| ||||||||||| ||||||| ||||| |||| ||||| ||| |||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaaggaatgtccgtgcatcata 21542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 17088358 - 17088399
Alignment:
Q  31 cacgtttccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  17088358 cacgtgtccgacaccgggacacgcctaatccgaggagtgtcc 17088399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 22423798 - 22423762
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22423798 acacgcctaatccgaggagtgtccgtgcttcatagat 22423762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 35017110 - 35017162
Alignment:
Q  31 cacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| ||| ||| ||| |||||||||||||||||||||||| ||||||||||    
T  35017110 cacgtgtccaacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4105296 - 4105379
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||| ||| || |||| || | || || || || || |||||||||||||||||||||||| |||||| ||||    
T  4105296 tgtaattacaagtgtaggtatcagactcgatatgtgtctgatactgggacacgcctaatccgaggagtgtccgtgcttcgtaga 4105379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 7677764 - 7677835
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| |||  | ||| | ||||||||||| ||||||||||||||||||| |||  ||||||||||    
T  7677764 gtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatccgaggagagtcggtgcttcatag 7677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 39758340 - 39758379
Alignment:
Q  44 ccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  39758340 ccggaacacgccttatccgaggagtgtccatgcttcatag 39758379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 43001859 - 43001922
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||  ||||||| ||  ||||| | |||||||||||||||||||||||| ||||||||    
T  43001859 gtgtcggacacgacacgtgtcaaacacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 10298635 - 10298669
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  10298635 acacgcctaatccgaggagtgtccgtgcttcatag 10298669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 17123132 - 17123166
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  17123132 acacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27932272 - 27932354
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| | | ||||||||||  ||||||| || |||||| | ||||||||||| ||||||||||   ||||||||||    
T  27932272 tgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 32766943 - 32766869
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    |||||||||||| |   ||||||| ||||||||| | | ||| |||||| ||||||||||| |||||||||||||    
T  32766943 gtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatagatt 32766869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 38464359 - 38464313
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||||    
T  38464359 tccgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 6770618 - 6770655
Alignment:
Q  46 ggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  6770618 ggtacacgcctaatccgaagagtgtccgtgcttcatag 6770655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 15086552 - 15086597
Alignment:
Q  38 ccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||| ||| |||||||||||||||||||||||  ||||||||||    
T  15086552 ccgacatcggaacacgcctaatccgaggagtgtctttgcttcatag 15086597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 30098391 - 30098456
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||  ||||||| || |||||| | |||| ||||||||||||| ||||| ||||||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatag 30098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 16203786 - 16203746
Alignment:
Q  41 acaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||||||||| ||||||||||||||||  ||||||||    
T  16203786 acaccggtacacgcttaatccgaggagtgtctgtgcttcat 16203746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 17593715 - 17593663
Alignment:
Q  31 cacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| ||| ||||||| |||||| ||||||||||||||||| | ||||||||    
T  17593715 cacgtgtccaacaccgggacacgcttaatccgaggagtgtccgtacttcatag 17593663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30502410 - 30502330
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| | |||||||||||||||  ||||| | |||||||| || ||| ||||||||| |||| ||| | ||||||||    
T  30502410 tgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30542753 - 30542673
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| | |||||||||||||||  ||||| | |||||||| || ||| ||||||||| |||| ||| | ||||||||    
T  30542753 tgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21880189 - 21880272
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||| | |||||||||||||||| ||||||| |||||||||||    
T  21880189 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 24339701 - 24339776
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagattg 87  Q
    |||||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagattg 24339776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 598245 - 598327
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||  ||||||||||||| |||  ||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15680846 - 15680928
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||||  ||||| ||||| |||||||||||| ||||||||||    
T  15680846 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21864845 - 21864927
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||| ||||||||  ||||||| ||||||||||| ||||| ||||| |||||||||||  ||||||||||    
T  21864845 tgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 32287474 - 32287404
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||||||| ||||| || ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  32287474 gtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 5409836 - 5409771
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||  ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43027491 - 43027404
Alignment:
Q  1 tgtaattacaagtgtcggtgtcg-----gacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| |||||||||||||||||     |||  ||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  43027491 tgtaaatacaagtgtcggtgtcgtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 9778571 - 9778624
Alignment:
Q  30 acacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  9778571 acacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 17852056 - 17852119
Alignment:
Q  20 gtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| |||||||| ||||||||||  |||| |||||| |||||||||||| ||||||||||    
T  17852056 gtcggacatgacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcatag 17852119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 6490789 - 6490835
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  6490789 tccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13770728 - 13770810
Alignment:
Q  1 tgtaattacaagtgtcg-----gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgctt 78  Q
    |||||||||||||||||     |||||||||   |||||| ||||||||||| ||||||||||||||| |||||||| |||||    
T  13770728 tgtaattacaagtgtcgttgtcgtgtcggacacaacacgtgtccgacaccggaacacgcctaatccgaagagtgtccgtgctt 13770810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18213055 - 18212973
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| | |||||||||||||||  ||| | |||| ||||| || |||||||| ||||||||||||||  ||||||||||    
T  18213055 tgtaattatatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24105715 - 24105797
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||| ||||| |   ||| || ||||||||||| |||||||||| |||||||||||   ||||||||||    
T  24105715 tgtaattacaagtgtcggagtcgggcacaacatgtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcatag 24105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 29763183 - 29763129
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| ||||||| | | |||||||||||||||||||||||| ||||||||||    
T  29763183 gacacgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 32094020 - 32093954
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggt-acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||  ||||||| |||||||||||  |||||||||||||||||||||| | ||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatag 32093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40287379 - 40287306
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttc 79  Q
    ||||||||||||||||||| ||||||     || | ||||||||||| ||| |||||||||||||||||||| ||||||    
T  40287379 tgtaattacaagtgtcggtatcggac-----acatgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttc 40287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 1433513 - 1433578
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||  |||| || ||||||||| | ||||| |||||||||||||||||| ||||||||||    
T  1433513 gtgtcggacaagacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 26033461 - 26033392
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||| ||| |||||||| ||||| ||||  |||| ||||||||||||||||||| || |||||    
T  26033461 gtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtgtttcat 26033392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 14729770 - 14729822
Alignment:
Q  31 cacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| | ||||||||    
T  14729770 cacgtgtccgacaccgggacacgcttaatccgaggagtgtccgtacttcatag 14729822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1401062 - 1401142
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||| |||||||| |||  |||| ||  |||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  1401062 tgtaattataagtatcggtgtccgacacgacatgt--ccgacatcgggacacacctaatctgaggagtgtccatgcttcatag 1401142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 22868113 - 22868164
Alignment:
Q  30 acacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||| || |||||||| |||| | ||||||||||||||||||||||||||    
T  22868113 acacgtgtcagacaccgggacacacataatccgaggagtgtccatgcttcat 22868164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 33994252 - 33994331
Alignment:
Q  4 aattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||| |||  ||||| | ||| ||||||  ||||||||||||| |||||||| | || |||||||    
T  33994252 aattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcatag 33994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 30813882 - 30813916
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  30813882 acacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 32308179 - 32308249
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||||| ||||  ||||| | ||||||||||  ||||  |||||||||||||||| |||||||||||    
T  32308179 gtgtcggtgttggacacgacacatgtccgacaccgagacacagctaatccgaggagtgttcatgcttcata 32308249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 35862036 - 35862070
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  35862036 acacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7197319 - 7197238
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||||||||||||||||||   |||| | ||||||||||| | || | || |||||| | ||||| |||||||||    
T  7197319 tgtaattacaagtgtcggtgtcggacacaacacatgtccgacaccgggatactcttattccgagaaatgtccgtgcttcata 7197238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 8842323 - 8842282
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    ||||||||| ||||||||||||| |||||||||| |||||||    
T  8842323 cgacaccgggacacgcctaatccaaggagtgtccgtgcttca 8842282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 20549828 - 20549909
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||| | |||||||||||||||   |||| | |||||||  |  ||||||||||||||||||||| || |||||||||    
T  20549828 tgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8234183 - 8234243
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatcc 61  Q
    |||| ||||||||| |||||||||||  ||||| | ||||||||||  |||||||||||||    
T  8234183 tgtagttacaagtgccggtgtcggacacgacacatgtccgacaccgagacacgcctaatcc 8234243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 29999026 - 29998974
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||| |||||||||   ||||| |||||| ||||||||||||||||||||    
T  29999026 gacacgtgtccgacacctaaacacgtctaatcggaggagtgtccatgcttcat 29998974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 241653 - 241727
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    |||| ||||||||||  ||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagatt 241727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5813629 - 5813707
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttc 79  Q
    ||||| ||||||||||||||||||||  ||||||| ||||||||||| |||||||||||  ||||||||||| ||||||    
T  5813629 tgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttc 5813707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36450776 - 36450694
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||| ||||||||||  ||| ||| ||||||||| | |||||||||||||||||||||||  ||||||||||    
T  36450776 tgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 926810 - 926730
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||||| ||| || | ||||||||||||||| ||||||||    
T  926810 tgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20679417 - 20679337
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| ||||||||||||| |||   |||||| ||||||||||| |||||||| | ||||||||||||||||||||||    
T  20679417 tgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgtccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 29510305 - 29510233
Alignment:
Q  11 agtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||  ||| ||| ||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  29510305 agtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 22652035 - 22652106
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  |||| || ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40332228 - 40332299
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    ||||||||||||||||||||| ||||  ||||||| ||| ||||||| || |||||||||||||||||||||    
T  40332228 tgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtcc 40332299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 15816129 - 15816058
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||| ||||||||||  ||||||  ||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  15816129 gtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31557033 - 31557116
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||| |||||||| |||  ||||| | ||||||||| | ||||||||||||| ||| |||||||||| |||||||    
T  31557033 tgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatccaaggtgtgtccatgcctcataga 31557116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 22197736 - 22197671
Alignment:
Q  18 gtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||| |||||||| |||||||||||  ||||||||||| ||||||||||| ||||| ||||    
T  22197736 gtgtcggacatgacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtgctttatag 22197671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15023279 - 15023199
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||||||||||| |||||||   ||||||| |||||  | || ||||| ||||||||||||||||||||| |||||    
T  15023279 tgtaattacaagtgtcgatgtcggatacgacacgtgtccgatgctggaacacgtctaatccgaggagtgtccatgattcat 15023199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 34451032 - 34450961
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| || ||||| || |||||||| |||| |||||||||| ||||||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 34450961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8343009 - 8343086
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||| || ||     | ||||||||||| ||||||||||||||| |||||||  ||||||||||    
T  8343009 tgtaattacaagtgtcggtgtcgtacatg-----tgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 8343392 - 8343446
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||  ||||||||||    
T  8343392 gacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 11803343 - 11803389
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  11803343 tccgacacaggtacacgtctaatccgaggagtgtccgtgcttcatag 11803389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18407756 - 18407838
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||| || |||||  ||||| | ||||||||  | |||||||||||  ||||||||||| ||||||||||    
T  18407756 tgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 22943343 - 22943301
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtc 71  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  22943343 gacacgtgtccgacaccgggacacgcctaatccgaggagtgtc 22943301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 17751730 - 17751775
Alignment:
Q  38 ccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||    
T  17751730 ccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17751775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 17760717 - 17760762
Alignment:
Q  38 ccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||    
T  17760717 ccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 29447109 - 29447040
Alignment:
Q  13 tgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||||||  |||| || || |||||| | ||||||||||||| |||||||||| |||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29447503 - 29447576
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagat 85  Q
    ||||||||||| |||  |||| || ||||||||||| ||| | |||||| ||||||||||| ||||||||||||    
T  29447503 gtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcatagat 29447576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3025588 - 3025668
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    |||||||| | ||||| |||||||||  ||||||| || ||||| |  ||||| |||||||||||||||||| ||||||||    
T  3025588 tgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 25566910 - 25566954
Alignment:
Q  44 ccggtacacgcctaatccgaggagtgtccatgcttcatagattga 88  Q
    |||| |||||||||||||||||||||||  |||||||||||||||    
T  25566910 ccgggacacgcctaatccgaggagtgtctgtgcttcatagattga 25566954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 126369 - 126298
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    |||||||| | ||||| |||||||||  ||||||| ||| | ||||| ||||| ||||||||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtcc 126298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 3951547 - 3951476
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| |||  ||||||| || ||||| || ||||||||||||| |||||| ||| ||||||||||    
T  3951547 gtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4298908 - 4298841
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtc 71  Q
    |||||||||||||||||||||| ||  |||||||| | ||||| ||| |||||||||||| ||||||||||    
T  4298908 tgtaattacaagtgtcggtgtcaga--tgacacgtgttcgaca-cgggacacgcctaatctgaggagtgtc 4298841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 8798839 - 8798792
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||||    
T  8798839 tccgacaccggaacacgcctaatccaaggagtgtccagacttcataga 8798792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 13436954 - 13436907
Alignment:
Q  39 cgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||| ||||||||||||| |||||||||  |||||||||||||    
T  13436954 cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatagatt 13436907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 4673400 - 4673354
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||| ||||||||||||| |||||||||  ||||||||||    
T  4673400 tccgacaccggaacacgcctaatccaaggagtgtctgtgcttcatag 4673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 24205791 - 24205749
Alignment:
Q  40 gacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||| |||||||||||||||||||||||| || ||||||    
T  24205791 gacaccggaacacgcctaatccgaggagtgtccgtgtttcata 24205749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 31514939 - 31514973
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  31514939 acacgcctaatccgaggagtgtccgtgcttcatag 31514973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43737833 - 43737752
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    |||||||| | |||||||||||||||  |||| || || ||||| || | |||||| |||| |||||||||| |||||||||    
T  43737833 tgtaattatatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 4498342 - 4498418
Alignment:
Q  3 taattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttc 79  Q
    |||||| |||||||||||||| |  | ||| || ||||||||||  |||| ||||||| ||||||||||| ||||||    
T  4498342 taattataagtgtcggtgtcgaatataacatgtatccgacaccgaaacacacctaatcagaggagtgtccgtgcttc 4498418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 6065650 - 6065586
Alignment:
Q  19 tgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||  ||||| | ||||||||||| |||||| |||| | |||||||||| ||||||||||    
T  6065650 tgtcggacacgacacatgtccgacaccggaacacgcataattcaaggagtgtccgtgcttcatag 6065586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 16987990 - 16988030
Alignment:
Q  41 acaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||| |||| ||||||||||||||||||| ||||||||    
T  16987990 acaccgggacacccctaatccgaggagtgtccgtgcttcat 16988030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 44067600 - 44067644
Alignment:
Q  37 tccgacaccggtacacgcctaatccgaggagtgtccatgcttcat 81  Q
    ||||||||| | ||||||||||| |||||||||||| ||||||||    
T  44067600 tccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5058 - 4976
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||||||||||||||||||||||  ||||||| |||||||  |  ||| |||||||||||||||||||  ||||||||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatag 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3345 - 3427
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||| |||||||||  |||||||    ||||| || |||||||||||||||||||||||| ||||||||||    
T  3345 tgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 8635 - 8561
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    |||||||| ||||||  || |||| |||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  8635 gtgtcggtatcggacacgatacgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatagatt 8561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4905 - 4818
Alignment:
Q  1 tgtaattacaagtgtcggtgtc--ggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||||||| ||||||  | ||  ||||| | |||||||| || |||||||||||||||||||||||| |||||||||||||    
T  4905 tgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagatt 4818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 71784 - 71860
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagattga 88  Q
    |||||||||||||||   |||||| ||||||||||| ||||| |||||||||||||||||  |||||||||| ||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcataggttga 71860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 70315 - 70394
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttca 80  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||| | ||| ||||||||||| |||||| | |||||||    
T  70315 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 45552 - 45467
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatagatt 86  Q
    ||||||||||||||||||||||||||  ||||||| || |||||||  ||| ||||||||| | || ||| | |||||||||||||    
T  45552 tgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgcgacatgcctaatccaaagattgtacgtgcttcatagatt 45467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 3849 - 3778
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||| ||||||||||  ||||| | ||||||| ||  |||||||||||||||||||||||| ||||||||||    
T  3849 gtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttcatag 3778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 2987 - 3058
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||| || |||  ||||||| | ||||||||| |||||||||||||||||||||||| |||| |||||    
T  2987 gtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14567 - 14647
Alignment:
Q  1 tgtaattacaagtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcataga 84  Q
    ||||||||||||||   |||||||||  ||||||| ||||||||||  ||||||||||||  |||||||| | |||||||||||    
T  14567 tgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcataga 14647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 51900 - 51941
Alignment:
Q  41 acaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  51900 acaccgggacacgcctaatccgaggaatgtccatgcttcata 51941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 92875 - 92940
Alignment:
Q  17 ggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcata 82  Q
    ||||||||||  ||||| | || |||||| | |||||||||||||||||||||||| |||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 53239 - 53299
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtcc 72  Q
    ||||||||||||||| |||||||| ||||||||||| |||||  |||||| || |||||||    
T  53239 gtgtcggtgtcggacatgacacgtgtccgacaccgggacacgtttaatccaagaagtgtcc 53299  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 13472 - 13543
Alignment:
Q  12 gtgtcggtgtcggacttgacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||  ||||||| | ||||| ||| | || ||||||||||||||||||| | ||||||||    
T  13472 gtgtcggtgtcggacacgacacgtatacgacatcgggatacacctaatccgaggagtgtccgtacttcatag 13543  T

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Target: scaffold0380 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 8666 - 8720
Alignment:
Q  29 gacacgtttccgacaccggtacacgcctaatccgaggagtgtccatgcttcatag 83  Q
    ||||||| |||||||| || | ||||||||||| |||||||||| ||||||||||    
T  8666 gacacgtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 46742 - 46776
Alignment:
Q  49 acacgcctaatccgaggagtgtccatgcttcatag 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  46742 acacgcctaatccgaggagtgtccgtgcttcatag 46776  T

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