View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_1 (Length: 791)
Name: NF15374_low_1
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 737; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 16 - 776
Target Start/End: Original strand, 7832049 - 7832809
Alignment:
| Q |
16 |
atcaaaggacaggaaagattgggaaggttgggatgtaatttcaaaaggacaacttatgggaagctgagggtggaggttgatgctaagtgtggtaatatta |
115 |
Q |
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| T |
7832049 |
atcaaaggacaggaaagattgggaaggttgggatgtaatttcaaaaggacaacttatgggaagctgagggtggaggttgatgctaagtgtggtaatatta |
7832148 |
T |
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| Q |
116 |
gaatggagcacaatgctcagaatcagaaacagcgtgagttgggaggtcaaattcacagcacaaatcaaaaacagaataagatgggtttgagcaagaaaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7832149 |
gaatggagcacaatgctcagaatcagaaacagcgtgagttgggaggtcaaattcacagcacaaatcaaaaacagaataagatgagtttgagcaagaaaag |
7832248 |
T |
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| Q |
216 |
tcttattatgtggattggatgctgctgctgctgttgtgattgaataataattgatttaaatgaaattgttgtaagactcatccttaggagtagttgaaat |
315 |
Q |
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| T |
7832249 |
tcttattatgtggattggatgctgctgctgctgttgtgattgaataataattgatttaaatgaaattgttgtaagactcatccttaggagtagttgaaat |
7832348 |
T |
|
| Q |
316 |
tgtattgaatcgtacccctcacatgggtgcttcagggtttgaatataccctcaaaccctggaatgatttgatagagcatttgaggggcaaagatggtgaa |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7832349 |
tgtattgaatcgtaccccttacatgggtgcttcagggtttgaatataccctcaaaccctgcaatgatttgatagagcatttgaggggcaaagatggtgaa |
7832448 |
T |
|
| Q |
416 |
aagagatattttttgctagttagtacattataaatttccattaaagtcataatctgcaagaagataaaagcaggaaatgaataaattgaaaattgttaat |
515 |
Q |
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| T |
7832449 |
aagagatattttttgctagttagtacattataaatttccattaaagtcataatttgcaagaagataaaagcaggaaatgaataaattgaaaattgttaat |
7832548 |
T |
|
| Q |
516 |
atgtgtatgcaacacacagatcaataagactatgtaaaacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattacttggtacag |
615 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832549 |
atgtgtatgcaacacacagatcaataaaactatgtaaaacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattacttggtacag |
7832648 |
T |
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| Q |
616 |
aaggtagtttgttcctaaacctcgtatgtttcaaatcatacaaacttgtcaccaaaaccaaagatctaagagtttagtctgcaaacatcaagtcatctaa |
715 |
Q |
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| T |
7832649 |
aaggtagtttgttcctaaacctcgtatgtttcaaatcatacaaacttgtcaccaaaaccaaagatctaagagtttagtctgcaaacatcaagtcatctaa |
7832748 |
T |
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| Q |
716 |
acctcggtagtttgaatcctactgcaagtatgcaaccgttcaaatcttatcatacctcatt |
776 |
Q |
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| T |
7832749 |
acctcggtagtttgaatcctactgcaagtatgcaaccgttcaaatcctatcatacctcatt |
7832809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 553 - 675
Target Start/End: Original strand, 7914765 - 7914887
Alignment:
| Q |
553 |
aacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattacttggtacagaaggtagtttgttcctaaacctcgtatgtttcaaatc |
652 |
Q |
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|||| ||||||||||| || |||||||||| ||||||| |||||||||||||||| || |||||||||||||||||||||||| | | |||| |||||| |
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| T |
7914765 |
aacagatttacagtaaactatctgttctagcagggagcctcttgaagaaattactcggaacagaaggtagtttgttcctaaactttggatgtctcaaatt |
7914864 |
T |
|
| Q |
653 |
atacaaacttgtcaccaaaacca |
675 |
Q |
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| T |
7914865 |
atacaaacctgtcaccaaaacca |
7914887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 602 - 675
Target Start/End: Complemental strand, 7834489 - 7834416
Alignment:
| Q |
602 |
attacttggtacagaaggtagtttgttcctaaacctcgtatgtttcaaatcatacaaacttgtcaccaaaacca |
675 |
Q |
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|||||| | ||||||||||||||||||||||||| | | |||| |||||| |||||||| |||||| ||||||| |
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| T |
7834489 |
attactcgatacagaaggtagtttgttcctaaactttggatgtctcaaattatacaaacctgtcactaaaacca |
7834416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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