View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_10 (Length: 316)
Name: NF15374_low_10
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 42745896 - 42745726
Alignment:
| Q |
131 |
tgaagaatgaacttgaccaaaatagttgactccattacaaataatggttgttcacattgggaatttggtaaaaattaatcacagaaattagtatataagc |
230 |
Q |
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| T |
42745896 |
tgaagaatgaacttgaccacaatagttgactccattacaaataatggttgttcacattgggaatttggtaaaaattaatcacagaaattagtatataagc |
42745797 |
T |
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| Q |
231 |
gagggagagcacatacactttgtatatccctaaaatttattttgaaaaacaaacatcattcatgagagaaa |
301 |
Q |
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| T |
42745796 |
gaaggagagcacatacactttgtatatccctaaaatttattttgaaaaacaaacatcattcatgagagaaa |
42745726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 42755242 - 42755087
Alignment:
| Q |
146 |
accaaaatagttgactccattacaaataatggttgttcacattgggaatttggtaaaaattaatcacagaaattagtatataagcgagggagagcacata |
245 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
42755242 |
accacaatagttgacttcattacaaataatggttgttcacattgggaatttggtaaaaattaatcacagaaaatagtatataagcgaaggagagcacata |
42755143 |
T |
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| Q |
246 |
cactttgtatatccctaaaatttattttgaaaaacaaacatcattcatgagagaaa |
301 |
Q |
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| T |
42755142 |
cactttgtatatccctaaaatttattttgaaaaacaaacatcattcatgagagaaa |
42755087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 42765067 - 42764890
Alignment:
| Q |
131 |
tgaagaatgaacttgaccaaaatagttgactccattacaaa----taatggttgttcacattgggaatttggt--aaaaattaatcacagaaattagt-a |
223 |
Q |
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| T |
42765067 |
tgaagaatgaacttaaccacaatagttgactccataacaaactcataatggctgctcacaaaaggaatttgaataaaaaaacaatcacataacttagtta |
42764968 |
T |
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| Q |
224 |
tataagcgagggagagcacatacactttgtatatccctaaaattt-attttgaaaaacaaacatcattcatgagagaa |
300 |
Q |
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| T |
42764967 |
tataagtgagggaaaacacataccctttgtatatccttgagattttattttgcataacaaacatcattcatgagagaa |
42764890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 42765426 - 42765386
Alignment:
| Q |
131 |
tgaagaatgaacttgaccaaaatagttgactccattacaaa |
171 |
Q |
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| T |
42765426 |
tgaagaatgaacttaatcacaatagttgactccattacaaa |
42765386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 23036595 - 23036690
Alignment:
| Q |
131 |
tgaagaatgaacttgaccaaaatagttgactccattacaaataatggttgttcacattgggaatttggtaaaaattaatcacagaaattagtatat |
226 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| | |||||||||| ||| ||||||||||||||| |||| |
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| T |
23036595 |
tgaagaatgaacttgaccacaacagttgactccattacaaataacagttgttcacatgagaaatttggtaagaatcaatcacagaaattagcatat |
23036690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 23036774 - 23036837
Alignment:
| Q |
215 |
aaattagtatataagcgagggagagcacatacactttgtatatccctaaaatttattttgaaaa |
278 |
Q |
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| T |
23036774 |
aaattagtatataagcgagggaaagcacataccctttgtacatccctaaaatttattttgaaaa |
23036837 |
T |
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