View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_11 (Length: 292)
Name: NF15374_low_11
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 7835018 - 7834754
Alignment:
| Q |
18 |
acttagctgtatagtttgttgattctattgtgtgatttgtctgaacaataaaatgtttgaatttacggtaaatttgacacaatataattttataaaaact |
117 |
Q |
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| T |
7835018 |
acttagctgtatagtttgttgattctattgtgtgatttgtctgaacaataaaatgtttaaatttacggtaaatttgacacaata--attttataaaaact |
7834921 |
T |
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| Q |
118 |
tcaaaatacaacttttaaaagaagtaatttccggtgaaattattttatgattcaagaactttggtgggatataatgattaccaacacaaagagcctcact |
217 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7834920 |
tcaaaacacaactttaaaaagaagtaatttccggtgaaattattttatgattcaagaactttggtgggatataatgattaccaacacaaagagcctcact |
7834821 |
T |
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| Q |
218 |
tttaataattgtatagccatgcnnnnnnnnnnnncatcttttggtgtgtgatttttcaacctttgctt |
285 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7834820 |
tttaataattgtatagccatgc-tttttatttttcatcttttggtgtgtgatttttcaacctttgctt |
7834754 |
T |
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