View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15374_low_14 (Length: 263)
Name: NF15374_low_14
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 26086788 - 26086552
Alignment:
| Q |
9 |
agcacagaaacttctattgttgctaagtactggtataaatttcgaggcaaagaatttggagaataaaacagcattagacatagcaagcactccaaagatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26086788 |
agcacagaaacttctattgttgctaagtactggtataaatttcgaggcaaagaatttggagaacaaaacagcattagacatagcaagcactccaaagatc |
26086689 |
T |
|
| Q |
109 |
aagagtatattattaagggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacatatgccaaggtcgaagacaacaactatgtata |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
26086688 |
aagagtatattattaagggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacatatgctaaggtcgaagaaaacaactatgtata |
26086589 |
T |
|
| Q |
209 |
aattgttaattcagacaattcgtattagaagtgacat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26086588 |
aattgttaattcagacaattcgtattagaagtgacat |
26086552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 14727461 - 14727630
Alignment:
| Q |
9 |
agcacagaaacttctattgttgctaagtactggtataaatttcgaggcaaagaatttggagaataaaacagcattagacatagcaagcactccaaagatc |
108 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
14727461 |
agcacaggcacttcaattgttggtaagtactggtataaatttgaaggaaaagaatttggagaacaaaacagcattagacataacaagcaccccagagatg |
14727560 |
T |
|
| Q |
109 |
aagagtatattattaagggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacata |
178 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
14727561 |
aagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
14727630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 30648607 - 30648714
Alignment:
| Q |
18 |
acttctattgttgctaagtactggtataaatttcgaggcaaagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtata |
117 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
30648607 |
acttctattgttggtaagtactggtatagatttgaaggcaaagaatagtgagaacaaaaccgcattagacatagcaagcacgccagagatcaagagtata |
30648706 |
T |
|
| Q |
118 |
ttattaag |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
30648707 |
ttattaag |
30648714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 28865710 - 28865830
Alignment:
| Q |
57 |
aaagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgct |
156 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||| || || ||| ||||| | ||| | |||||| | |
|
|
| T |
28865710 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagattaagagtatattattcagtgctggatcaaaaccaagcttagaagtcaca |
28865809 |
T |
|
| Q |
157 |
gatgctcccacacttgcacat |
177 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
28865810 |
gatgctcccacacgtgcacat |
28865830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 26089008 - 26089131
Alignment:
| Q |
56 |
caaagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgc |
155 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||||||||| | | ||||||||||||||||| ||||||||| ||||||| ||| || | |
|
|
| T |
26089008 |
caaagaatctggagaacaaaaccgcattagacatagcaagcactccagatgtgaagagtatattattaagttttggagcaaaacctagcatagaaatcac |
26089107 |
T |
|
| Q |
156 |
tgatgctcccacacttgcacatat |
179 |
Q |
| |
|
||||||||||||| || ||||||| |
|
|
| T |
26089108 |
tgatgctcccacaatttcacatat |
26089131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 15329613 - 15329678
Alignment:
| Q |
57 |
aaagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatattatt |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
15329613 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattatt |
15329678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 15509982 - 15510047
Alignment:
| Q |
57 |
aaagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatattatt |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
15509982 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattatt |
15510047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 17292997 - 17292838
Alignment:
| Q |
19 |
cttctattgttgctaagtactggtataaatttcgaggcaaagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatat |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||| || ||||| | ||| ||||||||| | |
|
|
| T |
17292997 |
cttcgattgttggtaagtactgggataaatttgaaggcgaagaatttggagaacaaaacagcattagacattgccgccactctagagaacaagagtatct |
17292898 |
T |
|
| Q |
119 |
tattaagggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacata |
178 |
Q |
| |
|
|||| || || ||| ||||| ||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
17292897 |
tatttagtgctggatcaaaacctagcttagaagtcatggatgctcccacacttgcacata |
17292838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 6611184 - 6611070
Alignment:
| Q |
64 |
ttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgctgatgctc |
163 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| || | ||||||||| ||||| | |||||| || || || |
|
|
| T |
6611184 |
ttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagcttagaagtcactcataatc |
6611085 |
T |
|
| Q |
164 |
ccacacttgcacata |
178 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6611084 |
ccacacttgcacata |
6611070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 4819672 - 4819792
Alignment:
| Q |
58 |
aagaatttggagaataaaacagcattagacatagcaagcactccaaagatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgctg |
157 |
Q |
| |
|
||||| ||||| || |||||| |||||||||| ||| ||| | |||||||||||||||||| ||| | ||||||||| || || |||||||| | |
|
|
| T |
4819672 |
aagaacttggaaaacaaaacatcattagacatggcagtgactagagagatcaagagtatattatcaagtgttggagcaaaacctggcttggaagtcacca |
4819771 |
T |
|
| Q |
158 |
atgctcccacacttgcacata |
178 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
4819772 |
atgcacccacacttgcacata |
4819792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University