View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_17 (Length: 248)
Name: NF15374_low_17
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9399147 - 9398911
Alignment:
| Q |
1 |
ttcttttaattttatatgtttcacaggatttcttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaaccc |
100 |
Q |
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| T |
9399147 |
ttcttttaatttcatatgtttcacaggatttctttacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaaccc |
9399048 |
T |
|
| Q |
101 |
ttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9399047 |
ttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagcc |
9398948 |
T |
|
| Q |
201 |
ataataaaagaaacatttcgtctacacccacaggttc |
237 |
Q |
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| T |
9398947 |
ataataaaagaaacatttcgtctacacccaccggttc |
9398911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 9381720 - 9381492
Alignment:
| Q |
3 |
cttttaattttatatgtttcacaggatttcttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaaccctt |
102 |
Q |
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| T |
9381720 |
cttttaatttcgtatgtttcacaggattttttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaaccctt |
9381621 |
T |
|
| Q |
103 |
cattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccat |
202 |
Q |
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| T |
9381620 |
cattattacaaaaagctcgtgaagaaatagacaatatagtagggaaaaatagactagtagatgaatctgacggtccaaatcttccttatattcaagccat |
9381521 |
T |
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| Q |
203 |
aataaaagaaacatttcgtctacacccac |
231 |
Q |
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| T |
9381520 |
aataaaagaaacatttcgtctacacccac |
9381492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 23244271 - 23244478
Alignment:
| Q |
25 |
aggatttcttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaat-gaacaacccttcattgttacaaaaagctcgtg |
123 |
Q |
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||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| || || || || ||||| || || | ||||||||||||| |
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| T |
23244271 |
aggatttcttcacagcaggaacagatacaacagcaatatcaacagaatgggcattagtagaactcataaaaaaacccatctttactccaaaaagctcgtg |
23244370 |
T |
|
| Q |
124 |
aagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtct |
223 |
Q |
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||||||| ||||| ||||||| ||||||||| ||| || ||||| ||| ||||| | || ||| | ||||| || |||| ||||||||||||||| |
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| T |
23244371 |
aagaaatcgacaacatagtaggcaaaaacagaacagttgaagaatccgacatttcaaatatgccatatctacaagcaatcataagagaaacatttcgtct |
23244470 |
T |
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| Q |
224 |
acacccac |
231 |
Q |
| |
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||||||| |
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| T |
23244471 |
tcacccac |
23244478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 23223371 - 23223331
Alignment:
| Q |
177 |
ccaaatcttccttatattcaagccataataaaagaaacatt |
217 |
Q |
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| T |
23223371 |
ccaaaccttccttatatacaagccattataaaagaaacatt |
23223331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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