View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_18 (Length: 240)
Name: NF15374_low_18
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 5390395 - 5390226
Alignment:
| Q |
46 |
ccagtaaaaagcttaagaactattgaatgaaatttgtacattatatgctagacaaacaactttggaagaaatatacaaatcaaactacaaatgacatatt |
145 |
Q |
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| T |
5390395 |
ccagtaaaaagcttaagaactattgaa----atttgtacattatatgctagacaaacaactttggaagaaatatacaaatcaaactacaaatgacatatt |
5390300 |
T |
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| Q |
146 |
agtaatttctgagttacattatatgcttcaagaaaagaaaaataaaagatgctacgtattgtgatagtctgaga |
219 |
Q |
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| T |
5390299 |
agtaatttctgaggtacattatatgcttcaagaaaagaaaaataaaagatgctacgtattgtgatagtctgaga |
5390226 |
T |
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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 5394054 - 5393983
Alignment:
| Q |
139 |
acatattagtaatttctgagttacattatatgcttcaagaaaagaaaaataaaagatgctacgtattgtgat |
210 |
Q |
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|||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
5394054 |
acatattaataatttctaagttacattatatggttcaagaatagaaaaataaaagatgctacgtattgtgat |
5393983 |
T |
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