View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15374_low_20 (Length: 215)

Name: NF15374_low_20
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15374_low_20
NF15374_low_20
[»] chr3 (1 HSPs)
chr3 (17-180)||(21193386-21193549)
[»] chr7 (2 HSPs)
chr7 (28-101)||(2213978-2214051)
chr7 (28-109)||(45374383-45374464)
[»] chr2 (3 HSPs)
chr2 (28-134)||(19923290-19923396)
chr2 (28-109)||(37053078-37053159)
chr2 (28-83)||(8497225-8497280)
[»] chr4 (2 HSPs)
chr4 (28-103)||(17515992-17516067)
chr4 (28-84)||(37939217-37939273)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 21193386 - 21193549
Alignment:
Q  17 cacagatttcagatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatggggactgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21193386 cacagatttcagatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatggggactgc 21193485  T
Q  117 ttgtccagttcggaagcaagtatatacaatctctctaccttttatgaaatttgattacatactt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21193486 ttgtccagttcggaagcaagtatatacaatctctctaccttttatgaaatttgattacatactt 21193549  T

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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 2213978 - 2214051
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttg 101  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  2213978 gatggatgtcaatggaggaaatatggacaaaagatagcaaaaggaaatccatgtccaagagcttactatcgttg 2214051  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 45374464 - 45374383
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatgg 109  Q
    ||||||||||| ||||| ||||||||||| || ||||| ||||| ||||| |||||  | || || ||||||||||| ||||    
T  45374464 gatggatgtcagtggaggaaatatggacaaaaaatggccaagggtaacccttgtcctcgtgcctactatcgttgcactatgg 45374383  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 19923290 - 19923396
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatggggactgcttgtccagttc 127  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||||||||| |||||| |||| || ||||||||||  ||||| ||| | || |||||||    
T  19923290 gatgggtgtcaatggagaaaatatggacaaaagacggccaagggaaacccttgtccacgagcctactatcgttgcagtatgggaacttcatgcccagttc 19923389  T
Q  128 ggaagca 134  Q
    | |||||    
T  19923390 gaaagca 19923396  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 37053078 - 37053159
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgcacaatgg 109  Q
    ||||| |||||||||||||| || |||||||| ||||| || |||||||| |||||  ||||||||||||| ||||| ||||    
T  37053078 gatgggtgtcaatggagaaagtacggacagaaaatggcgaaaggaaacccgtgtcctcgagcttattatcgatgcaccatgg 37053159  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 8497280 - 8497225
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtcc 83  Q
    |||||||| |||||||||||||||||||| || ||||| || ||||| ||||||||    
T  8497280 gatggatgccaatggagaaaatatggacaaaaaatggctaaaggaaatccatgtcc 8497225  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 17516067 - 17515992
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtccaagagcttattatcgttgca 103  Q
    ||||||||||| |||||||| |||||||||||  || | ||  ||||||||||||| | ||| |||||||||||||    
T  17516067 gatggatgtcactggagaaagtatggacagaaactgacgaaaagaaacccatgtcctaaagcgtattatcgttgca 17515992  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 37939217 - 37939273
Alignment:
Q  28 gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtcca 84  Q
    ||||| || |||||||||||||||||||| || || ||||| ||||| |||||||||    
T  37939217 gatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtcca 37939273  T

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