View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_22 (Length: 203)
Name: NF15374_low_22
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 49351234 - 49351106
Alignment:
| Q |
59 |
tttggtatgtgaatgagaatgcaaaagtgaaagcaatcagataaagcacttcggaggaaaaaggtggaagaagataagagcaaggaagaatgaactaata |
158 |
Q |
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| T |
49351234 |
tttggtatgggaatgaaaaagcaaaagtgaaagcaatcagataaagcacttcggaggaaaaaggtggaagaagataagagcaaggaagaatgaactaata |
49351135 |
T |
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| Q |
159 |
cagtgtccaatcaatgattagcaatcatt |
187 |
Q |
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| T |
49351134 |
cagtgtccaatcaatgattagcaatcatt |
49351106 |
T |
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Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 49351346 - 49351241
Alignment:
| Q |
1 |
gtgattctgccatgttgattggttttggaggataaggtggaacgtaggagcttctaaatttggtatgtgaatgagaatgcaaaagtgaaagcaatcagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
49351346 |
gtgattctgccatgttgattggttttggaggataaggtggaacgtaggagcttctaaatttggtatgtgaatgagaatgcaaaagtgaaaccaatcaggt |
49351247 |
T |
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| Q |
101 |
aaagca |
106 |
Q |
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|||||| |
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| T |
49351246 |
aaagca |
49351241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13441757 - 13441785
Alignment:
| Q |
1 |
gtgattctgccatgttgattggttttgga |
29 |
Q |
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| T |
13441757 |
gtgattctgccatgttgattggttttgga |
13441785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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