View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_3 (Length: 590)
Name: NF15374_low_3
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 11667765 - 11668095
Alignment:
| Q |
8 |
tagataatactttcaataatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11667765 |
tagataatactttcaataatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattg |
11667864 |
T |
|
| Q |
108 |
ctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
207 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667865 |
ctaaagatcatgagtatggccatgcaagctgtaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
11667964 |
T |
|
| Q |
208 |
tactgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667965 |
tactgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgat |
11668064 |
T |
|
| Q |
308 |
taccctaccccttctactccccataacccac |
338 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11668065 |
taccctaccccttctactccccataacccac |
11668095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 11654003 - 11654330
Alignment:
| Q |
8 |
tagataatactttcaataatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattg |
107 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11654003 |
tagataatactttcaat---ggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattg |
11654099 |
T |
|
| Q |
108 |
ctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654100 |
ctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
11654199 |
T |
|
| Q |
208 |
tactgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654200 |
tactgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgat |
11654299 |
T |
|
| Q |
308 |
taccctaccccttctactccccataacccac |
338 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
11654300 |
taccctaccccttctactccccataacccac |
11654330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 11663397 - 11663612
Alignment:
| Q |
25 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatat |
124 |
Q |
| |
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||||||| ||||| | |||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||||||| || || || |
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| T |
11663397 |
aatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctaatggcagtggaagcagctagtcctcctggaaatgctaaaggtcgtgggaat |
11663496 |
T |
|
| Q |
125 |
ggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
224 |
Q |
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|| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
11663497 |
ggttatgcaacctgcaagataaagaagtacaaacattgctataattcggttcatgtatgtcctaagtcttgtccttatgattgtactgtggagtgtgcct |
11663596 |
T |
|
| Q |
225 |
cttgcaaacctatttg |
240 |
Q |
| |
|
|||||||||||||||| |
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| T |
11663597 |
cttgcaaacctatttg |
11663612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 7345073 - 7344855
Alignment:
| Q |
25 |
aatggctcaaataatggttcaagttttggtgtcaatcttgct---tgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaa |
121 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7345073 |
aatggctaaattaatggttcaaactttggtgtcaataattctccttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcgtgag |
7344974 |
T |
|
| Q |
122 |
tatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtg |
221 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| ||| ||| ||||||| ||||||||||||| |
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| T |
7344973 |
catggttatgcaagctgcaagataaagaagtacaaacattgctataatatggttcatgcatgtcctaagtcttgtccttatgattgcactgtggagtgtg |
7344874 |
T |
|
| Q |
222 |
cctcttgcaaacctatttg |
240 |
Q |
| |
|
| ||||||||||| ||||| |
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| T |
7344873 |
cttcttgcaaaccaatttg |
7344855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 496 - 574
Target Start/End: Original strand, 11654503 - 11654581
Alignment:
| Q |
496 |
taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactccatcttcttcatctaattcgtcttcttcttca |
574 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11654503 |
taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactccatcttcttcatctaattcgtcttcctcttca |
11654581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 496 - 574
Target Start/End: Original strand, 11668268 - 11668346
Alignment:
| Q |
496 |
taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactccatcttcttcatctaattcgtcttcttcttca |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11668268 |
taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactccatcttcttcatctaattcgtcttcctcttca |
11668346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 11654384 - 11654418
Alignment:
| Q |
383 |
cctaatagctcttctccaccacataaccaacataa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
11654384 |
cctaatagctcttctccaccacataaccaacataa |
11654418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 11668149 - 11668183
Alignment:
| Q |
383 |
cctaatagctcttctccaccacataaccaacataa |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
11668149 |
cctaatagctcttctccaccacataaccaacataa |
11668183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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