View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_5 (Length: 488)
Name: NF15374_low_5
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Original strand, 31649504 - 31649938
Alignment:
| Q |
9 |
atatgaatagttattgaaatttacaatgaacaatggattcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgt |
108 |
Q |
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| T |
31649504 |
atatgaatagttattgaaatttgcaatgaacattggattcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgt |
31649603 |
T |
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| Q |
109 |
tcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaa |
208 |
Q |
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| T |
31649604 |
tcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaa |
31649703 |
T |
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| Q |
209 |
cnnnnnnnnnncaagaaaaacggacaaaactaagtctcatttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagata |
308 |
Q |
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| T |
31649704 |
cataaaaaaaacgagaaaaacggacaaaactaggtctcgtttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagata |
31649803 |
T |
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| Q |
309 |
tacgccgctcaatctcttggacaacttttcttagcaagcacgccacacgctaagatgaaaagaaaattgtgttagataatatacaaaaacaaaacatgta |
408 |
Q |
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| T |
31649804 |
tacgccgctcaatctcttggacaacttttcttagcaagcacgccacacgctaagatgaaaagaaaattttgttagataatatacaaaaacaaaacatgta |
31649903 |
T |
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| Q |
409 |
gtttcatgaatgcatttatgatttatatacaaaag |
443 |
Q |
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| T |
31649904 |
ctttcatgaatgcatttatgatttatatacaaaag |
31649938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 31649943 - 31649975
Alignment:
| Q |
437 |
acaaaagcaaatcaagagtatttatcatacagg |
469 |
Q |
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| T |
31649943 |
acaaaagcaaatcaagagtatttatcatacagg |
31649975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 43878891 - 43878792
Alignment:
| Q |
89 |
accttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaa |
188 |
Q |
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|||| ||||||||| | ||||| |||||||| ||||| |||||| ||||||| || | |||||||||||| || | ||| |||||||| ||||||||| |
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| T |
43878891 |
acctcactctcttctctagttccagatgcaagtgcctcgagtactcttattctcgactgatatttttcttcccgggccttaaaaagattactttgctgaa |
43878792 |
T |
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