View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15374_low_7 (Length: 469)
Name: NF15374_low_7
Description: NF15374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15374_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 2560741 - 2560333
Alignment:
| Q |
20 |
tgtagtacacacgagtagacgatgcatcgcaatcacaatgaagtattttaataaatataacataaaccgaattttgtaaccagaa---aaaatttatctt |
116 |
Q |
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| T |
2560741 |
tgtagtacacacgagtagacgatgcatcgcaatcacaatgaagtattttaataaatataacataaaccgaattttgtaaccagaaaaaaaaatttatctt |
2560642 |
T |
|
| Q |
117 |
gccatgaacttcattatttgaagttcaattaataacttgagaatctcagtagtcaagatacaatttgagc-aaactctccaaaatagtttttctataaca |
215 |
Q |
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| T |
2560641 |
gccatgaacttcattatttgaagttcaattaataacttgagaatctcagtagtcaagatacaattcgagcaaaactctccaaaatagtttttctataaca |
2560542 |
T |
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| Q |
216 |
---tttaaggttacgcatagcttctaatctttaaacgattaaggtgacatctaggttatccatgaaaaaatagtaggtaatttctccgaccaataaacac |
312 |
Q |
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| T |
2560541 |
ttttttaaggttacgcatagatt---------------ttaaagtgacatctagattatccatgaaaaaatagtagataatttatccgaccaataaacat |
2560457 |
T |
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| Q |
313 |
cggacacttaagtacattttcaagtgacatccataaactatcattgaccctggtaataaaagctcaattttttataggtaatatagaaaaaaccaacaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2560456 |
cggacacttaagtacattttcaagtgacatccataaactatcattgaccctggtaataaaagctcaattttttataggtaatatagaaaaaaccaacaat |
2560357 |
T |
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| Q |
413 |
taaccctgcatgaaaaaactccaa |
436 |
Q |
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| T |
2560356 |
taaccctgcatgaaaaaactccaa |
2560333 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 33896840 - 33896900
Alignment:
| Q |
252 |
taaggtgacatctaggttatccatgaaaaaatagtaggtaattt-ctccgaccaataaaca |
311 |
Q |
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| T |
33896840 |
taaggtgacaactagggtacccatgaaaaaatggtgggtaatttactccaaccaataaaca |
33896900 |
T |
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