View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15375_high_3 (Length: 320)
Name: NF15375_high_3
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15375_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 43415656 - 43415353
Alignment:
| Q |
1 |
ctcttaagcaccaaaatcatcagcaaggcaaatatataattgtaataaacaataatgagaggaggatgaagagagagcataaagacaaacaaattaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43415656 |
ctcttaagcaccaaaatcatcagcaaggcaaatatataattgtaataaacaataatgagaggaggatgaagagagagcataaagacaaacaaattaaata |
43415557 |
T |
|
| Q |
101 |
attaaaaagagagaaaataccttggatgctgtgtgttcttgaccactttctgtccgtacttcctccacttgtaaccatcatccaacacatccacgtcgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43415556 |
attaaaaagagagaaaataccttggatgctgtgtgttcttgaccactttctgtccgtacttcctccacttgtaaccatcgtccaacacatccacgtcgct |
43415457 |
T |
|
| Q |
201 |
catagtcttgaagcaaaacctaggctccctcacctttcttcttcccttcattttcttcatctttattgcagaaacccctagttgttgattatgattatga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43415456 |
catagtcttgaagcaaaacctaggctccctcacctttcttcttcccttcattttcttcatctttattgcagaaacccctagttgttgattatgatgatga |
43415357 |
T |
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| Q |
301 |
tgat |
304 |
Q |
| |
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|||| |
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| T |
43415356 |
tgat |
43415353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 117 - 260
Target Start/End: Original strand, 38496003 - 38496149
Alignment:
| Q |
117 |
ataccttggatgctgtgtgttcttgaccactttctgtccgtacttcctccacttgtaaccatcatccaacacatccacgtc---gctcatagtcttgaag |
213 |
Q |
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|||||| ||||| || |||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||| || |||||| |
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| T |
38496003 |
atacctgggatgttgggtgttctttacaactttttgtccatacttcctccacttgtaaccatcatccaacacatccacatcagtactcaatgttttgaag |
38496102 |
T |
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| Q |
214 |
caaaacctaggctccctcacctttcttcttcccttcattttcttcat |
260 |
Q |
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|||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
38496103 |
caaaacctaggctctctcactttctttcttcccttcattttcttcat |
38496149 |
T |
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