View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15375_high_5 (Length: 305)
Name: NF15375_high_5
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15375_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 37984871 - 37984604
Alignment:
| Q |
38 |
ggtagaaagagtgagnnnnnnncatcataaatactagaatactagaatggaagacaaataccaaagaacagaaccaacagtgtaagacattaaaaataag |
137 |
Q |
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| T |
37984871 |
ggtagaaagagtgagaaaaaaacatcataaatactagaatactagaatggaagacaaataccaaagaacagaaccaacagtgtaagacattaaaaataag |
37984772 |
T |
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| Q |
138 |
aacctcttgtggatttttatgattaaaattctaagtcattttgctctcaagtgaaagcttctttcaaaagtttctattttgggtttatatgttcaccttc |
237 |
Q |
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| T |
37984771 |
aacctcttgtggatttttatgatcaaaattctaagtcattttgctctcaagtgaaagcttctttcaaaagtttctattttgggtttatatgttcaccttc |
37984672 |
T |
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| Q |
238 |
ttctcatttcaatctcaactcatcattcttgtttgagaaattgaaacttttcaaactctctccaaaat |
305 |
Q |
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| T |
37984671 |
ttctcatttcaatctcaactcatcattcttgtttgagaaattgaaacttttcatactctctccaaaat |
37984604 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 28007140 - 28007085
Alignment:
| Q |
76 |
atactagaatggaagaca----aataccaaagaacagaaccaacagtgtaagacat |
127 |
Q |
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| T |
28007140 |
atactagaatggaagacattcaaatgccaaagaacagaaccaacagtgtaagacat |
28007085 |
T |
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