View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15375_low_10 (Length: 243)
Name: NF15375_low_10
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15375_low_10 |
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| [»] scaffold0038 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28328076 - 28328303
Alignment:
| Q |
1 |
ccagtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328076 |
ccagtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
28328175 |
T |
|
| Q |
101 |
cagacattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaaagatatcaaactgaagaaatgcaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28328176 |
cagacattactgctaacgggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaatgatatcaaactgaagaaatgcaa |
28328275 |
T |
|
| Q |
201 |
cttgtcagatgaatttcttccaatactt |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
28328276 |
cttgtcagatgaatttcttccaatactt |
28328303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28505712 - 28505939
Alignment:
| Q |
1 |
ccagtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28505712 |
ccagtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
28505811 |
T |
|
| Q |
101 |
cagacattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaaagatatcaaactgaagaaatgcaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28505812 |
cagacattactgctaacgggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaatgatatcaaactgaagaaatgcaa |
28505911 |
T |
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| Q |
201 |
cttgtcagatgaatttcttccaatactt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28505912 |
cttgtcagatgaatttcttccaatactt |
28505939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28524712 - 28524939
Alignment:
| Q |
1 |
ccagtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28524712 |
ccagtttcatttcaaaatctcactgggcttattctcttagacatagaaggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
28524811 |
T |
|
| Q |
101 |
cagacattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaaagatatcaaactgaagaaatgcaa |
200 |
Q |
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|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
28524812 |
cagacattattgctaacgggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaaatatatcaaactgaaaaaatgcaa |
28524911 |
T |
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| Q |
201 |
cttgtcagatgaatttcttccaatactt |
228 |
Q |
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|||||||||||| ||||||||||||||| |
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| T |
28524912 |
cttgtcagatgattttcttccaatactt |
28524939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 28245906 - 28246058
Alignment:
| Q |
73 |
agtagcatttttaggatgccaaatttgtcagacattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcc |
172 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| | |||||| | |||| |||||||| ||||||| |||||||||| ||||||||||||| |||| ||| |
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| T |
28245906 |
agtagcatttttagaatgccaaatctgtcaaagattactttttaccgttgcatatttcccaaactagatgataaatggagttccatggtgtctacaagcc |
28246005 |
T |
|
| Q |
173 |
caaaagatatcaaactgaagaaatgcaacttgtcagatgaatttcttccaata |
225 |
Q |
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||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
28246006 |
caacagatatccaactggtaaaatgcaacttgtcagatgaatttcttccaata |
28246058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 28190870 - 28191028
Alignment:
| Q |
1 |
ccagtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||| ||||| |||||||||||| |||| || || |||||||||||||||||||||||| ||| |
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| T |
28190870 |
ccagtttcatttcaaaatctcacgaagcttctttacttaactataaaaggaaaaggaatggttaggttgccaagtagcatttttaggatgccaaatctgt |
28190969 |
T |
|
| Q |
101 |
cagacattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatg |
159 |
Q |
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|||||||||| ||| | | |||||||| ||||||||||||||||||| ||||||||| |
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| T |
28190970 |
cagacattacagctgaaggttgcatatttcccaaactggatgataaattgagttccatg |
28191028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 28238856 - 28239077
Alignment:
| Q |
4 |
gtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgtcag |
103 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| ||| | ||||| ||||||||||| || || |||| ||||| ||| ||||||||| |||||| |
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| T |
28238856 |
gtttcatttcaaaatctcacggggcttcgtcgattaagtatagaaggaaatggaatgcttaggttgccaagtatcatttgtagtatgccaaatctgtcag |
28238955 |
T |
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| Q |
104 |
acattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaaagatatcaaactgaagaaatgcaactt |
203 |
Q |
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|| || | | ||||||| | ||||| ||||||||||||| |||||||||||| | || || || | |||| | |||| || |||| ||| |
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|
| T |
28238956 |
ttgtttatgttcgaggttgcatatggcccaaagtggatgataaattgagttccatggtgacttcaagcgcagagcatatgcacctgagaaattgcatctt |
28239055 |
T |
|
| Q |
204 |
gtcagatgaatttcttccaata |
225 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
28239056 |
gtcagatgaatttcttccaata |
28239077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 28191074 - 28191103
Alignment:
| Q |
196 |
tgcaacttgtcagatgaatttcttccaata |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
28191074 |
tgcaacttgtcagatgaatttcttccaata |
28191103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 46068 - 46220
Alignment:
| Q |
73 |
agtagcatttttaggatgccaaatttgtcagacattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcc |
172 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| | |||||| | |||| |||||||| ||||||| |||||||||| ||||||||||||| |||| ||| |
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| T |
46068 |
agtagcatttttagaatgccaaatctgtcaaagattactttttaccgttgcatatttcccaaactagatgataaatggagttccatggtgtctacaagcc |
46167 |
T |
|
| Q |
173 |
caaaagatatcaaactgaagaaatgcaacttgtcagatgaatttcttccaata |
225 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
46168 |
caacagatatccaactggtaaaatgcaacttgtcagatgaatttcttccaata |
46220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 39018 - 39239
Alignment:
| Q |
4 |
gtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgccaaatttgtcag |
103 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| ||| | ||||| ||||||||||| || || |||| ||||| ||| ||||||||| |||||| |
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| T |
39018 |
gtttcatttcaaaatctcacggggcttcgtcgattaagtatagaaggaaatggaatgcttaggttgccaagtatcatttgtagtatgccaaatctgtcag |
39117 |
T |
|
| Q |
104 |
acattactgctaaccggtgcatattgtccaaactggatgataaatttagttccatggtgtttacatgcccaaaagatatcaaactgaagaaatgcaactt |
203 |
Q |
| |
|
|| || | | ||||||| | ||||| ||||||||||||| |||||||||||| | || || || | |||| | |||| || |||| ||| |
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|
| T |
39118 |
ttgtttatgttcgaggttgcatatggcccaaagtggatgataaattgagttccatggtgacttcaagcgcagagcatatgcacctgagaaattgcatctt |
39217 |
T |
|
| Q |
204 |
gtcagatgaatttcttccaata |
225 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39218 |
gtcagatgaatttcttccaata |
39239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 55943 - 55854
Alignment:
| Q |
4 |
gtttcatttcaaaatctcactgggcttagtaacttaaaaataaagggaaaaggaatgcttagattacctagtagcatttttaggatgcca |
93 |
Q |
| |
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|||||||||||||| ||||| |||||| |||||||| |||| ||||| |||||||||||||| || ||||| ||||||||||||||| |
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|
| T |
55943 |
gtttcatttcaaaaactcacggggcttcttaacttaattataataggaaatggaatgcttagattgccaagtagtatttttaggatgcca |
55854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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