View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15375_low_11 (Length: 239)

Name: NF15375_low_11
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15375_low_11
NF15375_low_11
[»] chr1 (8 HSPs)
chr1 (17-239)||(34371750-34371972)
chr1 (191-239)||(25934653-25934701)
chr1 (199-239)||(44482267-44482307)
chr1 (143-239)||(9828081-9828175)
chr1 (199-239)||(25361923-25361963)
chr1 (190-239)||(6612144-6612193)
chr1 (190-239)||(17408728-17408777)
chr1 (199-239)||(47989534-47989574)
[»] chr6 (8 HSPs)
chr6 (190-239)||(10294144-10294193)
chr6 (191-239)||(16488564-16488612)
chr6 (189-239)||(9195726-9195776)
chr6 (199-239)||(18367873-18367913)
chr6 (200-239)||(34384958-34384997)
chr6 (201-239)||(28862159-28862197)
chr6 (190-239)||(8365492-8365541)
chr6 (190-239)||(16766734-16766783)
[»] chr2 (8 HSPs)
chr2 (190-239)||(35056905-35056954)
chr2 (190-239)||(44860357-44860406)
chr2 (191-239)||(28524463-28524511)
chr2 (199-239)||(34784964-34785004)
chr2 (191-239)||(36096349-36096397)
chr2 (199-234)||(6045898-6045933)
chr2 (190-239)||(37419780-37419829)
chr2 (199-239)||(18054785-18054825)
[»] chr5 (11 HSPs)
chr5 (191-239)||(21814298-21814346)
chr5 (191-239)||(6401535-6401583)
chr5 (188-239)||(11685976-11686026)
chr5 (190-239)||(21542067-21542116)
chr5 (190-239)||(36642735-36642784)
chr5 (198-239)||(37328825-37328866)
chr5 (191-239)||(18592110-18592158)
chr5 (188-239)||(3966540-3966591)
chr5 (190-227)||(21522799-21522836)
chr5 (190-227)||(21533365-21533402)
chr5 (200-239)||(36838580-36838620)
[»] scaffold0003 (1 HSPs)
scaffold0003 (190-239)||(241631-241680)
[»] scaffold0036 (1 HSPs)
scaffold0036 (199-239)||(9729-9769)
[»] chr8 (9 HSPs)
chr8 (199-239)||(15816111-15816151)
chr8 (194-239)||(25172675-25172720)
chr8 (207-239)||(11927076-11927108)
chr8 (191-239)||(26902149-26902197)
chr8 (156-237)||(22652015-22652094)
chr8 (190-239)||(2572029-2572078)
chr8 (190-239)||(29447481-29447530)
chr8 (207-239)||(11944702-11944734)
chr8 (194-222)||(41831923-41831951)
[»] chr4 (9 HSPs)
chr4 (196-232)||(5225592-5225628)
chr4 (190-239)||(22234863-22234912)
chr4 (190-239)||(30982851-30982900)
chr4 (191-239)||(5414146-5414194)
chr4 (201-237)||(44132628-44132664)
chr4 (191-239)||(46083965-46084013)
chr4 (191-237)||(847990-848036)
chr4 (146-239)||(19312372-19312463)
chr4 (199-239)||(19500840-19500880)
[»] scaffold0316 (1 HSPs)
scaffold0316 (164-230)||(16180-16244)
[»] chr7 (4 HSPs)
chr7 (201-239)||(6630896-6630934)
chr7 (190-239)||(26329355-26329404)
chr7 (194-239)||(24339679-24339724)
chr7 (199-239)||(15902859-15902899)
[»] chr3 (6 HSPs)
chr3 (202-239)||(8039820-8039857)
chr3 (191-239)||(11665981-11666029)
chr3 (190-228)||(28812563-28812601)
chr3 (190-239)||(41961623-41961672)
chr3 (191-231)||(25064952-25064992)
chr3 (201-237)||(28678342-28678378)
[»] scaffold0623 (1 HSPs)
scaffold0623 (191-239)||(5970-6018)
[»] scaffold0450 (1 HSPs)
scaffold0450 (190-227)||(8608-8645)
[»] scaffold0279 (1 HSPs)
scaffold0279 (190-239)||(17853-17902)
[»] scaffold0171 (1 HSPs)
scaffold0171 (190-239)||(23548-23597)
[»] scaffold0136 (1 HSPs)
scaffold0136 (190-239)||(3822-3871)
[»] scaffold0123 (1 HSPs)
scaffold0123 (190-239)||(44498-44547)
[»] scaffold0044 (1 HSPs)
scaffold0044 (190-239)||(53217-53266)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 34371972 - 34371750
Alignment:
Q  17 taaacttttcaattgtatctaatgatctttctgatttctttattcattgtaattaaggcctctaatctcactcgtacacttttacacatagagacaacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34371972 taaacttttcaattgtatctaatgatctttctgatttctttattcattgtaattaaggactctaatctcactcgtacacttttacacatagagacaacat 34371873  T
Q  117 atatgatctgagccataaactctgagcctatgaaacatagacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaaca 216  Q
    ||| |||||||||||||||||||||||||||||| || | |||||  | |||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  34371872 ataagatctgagccataaactctgagcctatgaagcacaaacactttttggatttgacgtgtctcggtatattggacacgtgtcgtatccgacaccaaca 34371773  T
Q  217 cgacaccgacacatataattaca 239  Q
    |||||||||||||||||||||||    
T  34371772 cgacaccgacacatataattaca 34371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 25934701 - 25934653
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  25934701 gacacgtgtcgtgtccgacaccgacacgataccgacacatataattaca 25934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 44482307 - 44482267
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  44482307 tcgtgtccgacaccgacacgacaccgacacatataattaca 44482267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 9828175 - 9828081
Alignment:
Q  143 cctatgaaacatagacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| ||  |||||| |||||||| |||||||| ||||   | |||||||| ||||||| |||||  |||||||||||||||||| |||||||    
T  9828175 cctatgaagcacggacactcctcggattagacgtgtcccggtg--tcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattaca 9828081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 25361963 - 25361923
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  25361963 tcgtgtccgacaccgacacgacactgacacatataattaca 25361923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 6612144 - 6612193
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| |||||||||||||| | ||||||||||||||| | ||||||||    
T  6612144 ggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattaca 6612193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 17408777 - 17408728
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| ||||||| || |||||||| ||||||||| |||||||||||    
T  17408777 ggacacgtgtcgtgtctgataccaacacaacaccgacatatataattaca 17408728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 47989574 - 47989534
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  47989574 tcgtgtccgacaccgacacgacaccgacacttgtaattaca 47989534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 10294193 - 10294144
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||    
T  10294193 ggacacatgtcgtgtccgacaccaacacgacaccgacacatataattaca 10294144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 16488564 - 16488612
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  16488564 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 16488612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 9195726 - 9195776
Alignment:
Q  189 tggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| | ||||||| |||||| ||||||||||||||||||||||||||    
T  9195726 tggacacatgtcgtgtcagacacctacacgacaccgacacatataattaca 9195776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 18367913 - 18367873
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  18367913 tcgtgtctgacaccgacacgacaccgacacatataattaca 18367873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 34384958 - 34384997
Alignment:
Q  200 cgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  34384958 cgtgtctgacaccaacacgaaaccgacacatataattaca 34384997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 28862197 - 28862159
Alignment:
Q  201 gtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  28862197 gtgtcagacaccaacacgacaccgacacatatgattaca 28862159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 8365492 - 8365541
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||||| ||| ||||||||||||||| | ||||||||    
T  8365492 ggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 8365541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 16766783 - 16766734
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| | |||||||||||| ||||||||||||||| | ||||||||    
T  16766783 ggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattaca 16766734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 35056954 - 35056905
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35056954 ggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 35056905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 44860406 - 44860357
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  44860406 ggacacatgtcgtgtccaacaccaacacgacaccgacacatataattaca 44860357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 28524511 - 28524463
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  28524511 gacacgtgttgtgtccgacaccaacacaacaacgacacatataattaca 28524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 34784964 - 34785004
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  34784964 tcgtgtccgataccgacacgacaccgacacatataattaca 34785004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 36096349 - 36096397
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||| | |||||||||||||| |||||||||||    
T  36096349 gacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattaca 36096397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 6045898 - 6045933
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataa 234  Q
    ||||||||||||||||||| ||||||||||||||||    
T  6045898 tcgtgtccgacaccaacaccacaccgacacatataa 6045933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 37419829 - 37419780
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | ||||||||    
T  37419829 ggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattaca 37419780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 18054785 - 18054825
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| ||||||| |||||||||| |||||||||||||||    
T  18054785 tcgtgttcgacaccgacacgacaccaacacatataattaca 18054825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 21814346 - 21814298
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21814346 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 21814298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 6401583 - 6401535
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  6401583 gacacgtgtcgtgtccgacactgacacgacaccgacacatataattaca 6401535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 11686026 - 11685976
Alignment:
Q  188 ttggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  11686026 ttggacacgtgtcgtgtccgacaccga-acgacaccgacacatataattaca 11685976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 21542116 - 21542067
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||||||||| ||||||||||||||| | ||||||||    
T  21542116 ggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 21542067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 36642735 - 36642784
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||||||||||||| ||||||||||| |||| |||||    
T  36642735 ggacacgtgtcgtgtccgacaccaacatgacaccgacacttatatttaca 36642784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 37328825 - 37328866
Alignment:
Q  198 atcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  37328825 atcgtgtccgacaccgacacgacaccgacacatgtaattaca 37328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 18592158 - 18592110
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| | |||||||||||| ||||||||||| ||||||||||||||    
T  18592158 gacacgtgttgtgtccgacaccgacacgacaccggcacatataattaca 18592110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 3966591 - 3966540
Alignment:
Q  188 ttggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| | | |||||||||||  ||||||||||||||||||||||||||    
T  3966591 ttggacacatgttgtgtccgacactgacacgacaccgacacatataattaca 3966540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 21522836 - 21522799
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgaca 227  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21522836 ggacacgtgtcgtgtccgacaccgacacgacaccgaca 21522799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 21533402 - 21533365
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgaca 227  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21533402 ggacacgtgtcgtgtccgacaccgacacgacaccgaca 21533365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 36838620 - 36838580
Alignment:
Q  200 cgtgtccgacaccaa-cacgacaccgacacatataattaca 239  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  36838620 cgtgtcggacaccaaacacgacaccgacacatataattaca 36838580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 241680 - 241631
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  241680 ggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattaca 241631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 9729 - 9769
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  9729 tcgtgtctgacaccaacacgacaccgacacatataattaca 9769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 15816111 - 15816151
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  15816111 tcgtgtccgacaccaacacgacaccgacacttataattaca 15816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 25172675 - 25172720
Alignment:
Q  194 acgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||||||   ||||||||||||||||||||||||||    
T  25172675 acgtatcgtgtccgacattgacacgacaccgacacatataattaca 25172720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 11927076 - 11927108
Alignment:
Q  207 gacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||||||||||||||||||||||    
T  11927076 gacaccaacacgacaccgacacatataattaca 11927108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 26902149 - 26902197
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  26902149 gacacgtgtcgtgtccgacactcatacgacaccgacacatataattaca 26902197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 22652094 - 22652015
Alignment:
Q  156 gacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 237  Q
    |||||| |||||||| |||||||| ||||   | |||||| | |||||||||||||| ||||||||||||||| | ||||||    
T  22652094 gacactcctcggattagacgtgtcccggtg--tcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaatta 22652015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 2572029 - 2572078
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||||||||  ||||||||||||||| | ||||||||    
T  2572029 ggacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattaca 2572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 29447530 - 29447481
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| | ||||||| |||||| |||||||||| |||||||||||||||    
T  29447530 ggacacatgtcgtgtctgacaccgacacgacaccaacacatataattaca 29447481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 11944734 - 11944702
Alignment:
Q  207 gacaccaacacgacaccgacacatataattaca 239  Q
    |||| ||||||||||||||||||||||||||||    
T  11944734 gacatcaacacgacaccgacacatataattaca 11944702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 41831923 - 41831951
Alignment:
Q  194 acgtatcgtgtccgacaccaacacgacac 222  Q
    |||||||||||||||||||||||||||||    
T  41831923 acgtatcgtgtccgacaccaacacgacac 41831951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 5225592 - 5225628
Alignment:
Q  196 gtatcgtgtccgacaccaacacgacaccgacacatat 232  Q
    |||||||||||||||||||||||||||||||||||||    
T  5225592 gtatcgtgtccgacaccaacacgacaccgacacatat 5225628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 22234863 - 22234912
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| ||||||| |||||| |||||||||||||||||| |||||||    
T  22234863 ggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattaca 22234912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 30982851 - 30982900
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| ||||||| |||||| ||||||||||||||| ||||||||||    
T  30982851 ggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 5414146 - 5414194
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||||||  |||||||||||| |||||||||||||    
T  5414146 gacacgtgtcgtgtccgacactgacacgacaccgatacatataattaca 5414194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 44132628 - 44132664
Alignment:
Q  201 gtgtccgacaccaacacgacaccgacacatataatta 237  Q
    |||| ||||||||||||||||||||||||||||||||    
T  44132628 gtgttcgacaccaacacgacaccgacacatataatta 44132664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 46083965 - 46084013
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||||||||    
T  46083965 gacacgtgtcgtgtccgatactgacacgacaccgacacatataattaca 46084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 848036 - 847990
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 237  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||    
T  848036 gacacgtttcgtgtccgacaccaacaagacaccgacacttgtaatta 847990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 19312463 - 19312372
Alignment:
Q  146 atgaaacatagacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||||  |||||| ||| |||| |||||||||||||   | |||||||| |||| ||||||| | |||||||||||| || ||||||||||    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtg--tcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattaca 19312372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 19500840 - 19500880
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||||||| ||||||||||  ||||||||||||||    
T  19500840 tcgtgtccgacaccgacacgacaccatcacatataattaca 19500880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 16244 - 16180
Alignment:
Q  164 tcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacat 230  Q
    ||||||| |||||||| ||||   ||||| |||||| ||||||||||||||||||||||||||||||    
T  16244 tcggattagacgtgtcccggtg--ttggatacgtattgtgtccgacaccaacacgacaccgacacat 16180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 6630896 - 6630934
Alignment:
Q  201 gtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  6630896 gtgtccgacaccaacacgacatcgacacatataattaca 6630934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 26329355 - 26329404
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| ||||||| |||||| ||||||| ||||||||||||||||||    
T  26329355 ggacacgtgtcgtgtctgacaccgacacgacgccgacacatataattaca 26329404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 24339724 - 24339679
Alignment:
Q  194 acgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||    
T  24339724 acgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 24339679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 15902899 - 15902859
Alignment:
Q  199 tcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  15902899 tcgtgtccgataccgacacaacaccgacacatataattaca 15902859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 8039820 - 8039857
Alignment:
Q  202 tgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattaca 8039857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 11666029 - 11665981
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||||  ||| ||||||||||||||||||||||||||||    
T  11666029 gacacgtgtcgtgtctaacatcaacacgacaccgacacatataattaca 11665981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 28812601 - 28812563
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacac 228  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  28812601 ggacatgtatcgtgtctgacaccaacacgacaccgacac 28812563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 41961623 - 41961672
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||||| ||| ||||||||||||||| | ||||||||    
T  41961623 ggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 41961672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 25064992 - 25064952
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacata 231  Q
    ||||||| ||||||||||||||||||||| ||| |||||||    
T  25064992 gacacgtgtcgtgtccgacaccaacacgataccaacacata 25064952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 28678378 - 28678342
Alignment:
Q  201 gtgtccgacaccaacacgacaccgacacatataatta 237  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  28678378 gtgtctgacaccaacacgacaccgacacatacaatta 28678342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 5970 - 6018
Alignment:
Q  191 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||||| |||||| ||||||| | ||||||||||||||||||||||||    
T  5970 gacacgtgtcgtgttcgacaccgatacgacaccgacacatataattaca 6018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 8608 - 8645
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgaca 227  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  8608 ggacacgtatcgtgtccgataccgacacgacaccgaca 8645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 17853 - 17902
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| |||||||| ||||| | ||||||||| ||||||||||||||    
T  17853 ggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataattaca 17902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 23597 - 23548
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||| |||||||||||||||| | ||||||| ||||| ||||||||||    
T  23597 ggacacatatcgtgtccgacaccgaaacgacactgacacttataattaca 23548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 3822 - 3871
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    ||||| || |||||||||||||||||||||||| ||||| | ||||||||    
T  3822 ggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattaca 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 44498 - 44547
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| | |||||| ||||| |||||| |||||||||||||||||||    
T  44498 ggacacgtgttgtgtccaacaccgacacgataccgacacatataattaca 44547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 53266 - 53217
Alignment:
Q  190 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataattaca 239  Q
    |||||||| || ||||||||||| ||||| ||||||||| ||||||||||    
T  53266 ggacacgtgtcatgtccgacaccgacacggcaccgacacttataattaca 53217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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