View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15375_low_2 (Length: 777)
Name: NF15375_low_2
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15375_low_2 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 186 - 765
Target Start/End: Complemental strand, 1749019 - 1748437
Alignment:
| Q |
186 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1749019 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
1748920 |
T |
|
| Q |
286 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748919 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
1748820 |
T |
|
| Q |
386 |
taaatgggagtcataacat-aaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
484 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748819 |
taaatgggagtcataacataaaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
1748720 |
T |
|
| Q |
485 |
gcactagctggtgtaggc-nnnnnnnnnnnnntggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaatt |
583 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748719 |
gcactagctggtgtaagcaaaaaaaaaaaaaatggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaatt |
1748620 |
T |
|
| Q |
584 |
agtggtggctaagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgttagaccaat |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1748619 |
agtggtggctaagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgtttgaccaat |
1748520 |
T |
|
| Q |
684 |
atgaatgagca-nnnnnnngcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
765 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748519 |
atgaatgagcattttttttgcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
1748437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 296 - 648
Target Start/End: Original strand, 20686385 - 20686739
Alignment:
| Q |
296 |
tttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctctaaatgggag |
395 |
Q |
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||||||||||||| ||||||||| | ||||||| ||||||| |||||||||||| ||||||| ||||| | | |||| ||||||| ||||||||||||| |
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| T |
20686385 |
tttccaaatttgccaggaaacctgcgtcaaatcgtaaaggagccataagttgttgttactgccattgtcgcttctttgttactgcttctctaaatgggag |
20686484 |
T |
|
| Q |
396 |
tcataacataaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatattagcactagctgg |
495 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
20686485 |
tcataacgtaaagttttttcaatcagattttgggtcattttcttcatggtaaaaggatcaaagagccaaatgtagccgagtttatattagccctagctgg |
20686584 |
T |
|
| Q |
496 |
tgtaggc--nnnnnnnnnnnnntggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtggct |
593 |
Q |
| |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
20686585 |
tgtaagcaaaaaaaaaaacagatggttatggcatgtgctacttcagcaggctctaccacactagctttagttgtcgttgttaatcaaattggtggtggct |
20686684 |
T |
|
| Q |
594 |
aagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcat |
648 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20686685 |
aagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcagtttcat |
20686739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 187 - 363
Target Start/End: Original strand, 20686192 - 20686368
Alignment:
| Q |
187 |
gagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctata |
286 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
20686192 |
gagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgatgttgtgtcgttcctgctttgctttttcaatattctata |
20686291 |
T |
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| Q |
287 |
ttatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgt |
363 |
Q |
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| |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
20686292 |
tcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgttgttactgccattgt |
20686368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 702 - 765
Target Start/End: Original strand, 20686772 - 20686835
Alignment:
| Q |
702 |
gcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
765 |
Q |
| |
|
|||||||||||| |||||||||||| | || |||||||||||||||||| |||| ||||||||| |
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| T |
20686772 |
gcaaattgactgcaatcttaagagtctaacgaattaaattattgtttttatactacctttgctt |
20686835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 186 - 765
Target Start/End: Complemental strand, 42383926 - 42383346
Alignment:
| Q |
186 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383926 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
42383827 |
T |
|
| Q |
286 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383826 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
42383727 |
T |
|
| Q |
386 |
taaatgggagtcataacat-aaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
484 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383726 |
taaatgggagtcataacataaaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
42383627 |
T |
|
| Q |
485 |
gcactagctggtgtaggcnnnnnnnnnnnnntggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaatta |
584 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42383626 |
gcactagctggtgtaagc-aaaaaaaaaaaatggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgctgttaatcaaatta |
42383528 |
T |
|
| Q |
585 |
gtggtggctaagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgttagaccaata |
684 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42383527 |
gtggtggctaagtcatttgcattgtcgtaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagaacaaataccaatgttagaccaata |
42383428 |
T |
|
| Q |
685 |
tgaatgagca-nnnnnnngcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
765 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383427 |
tgaatgagcattttttttgcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
42383346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 42387062 - 42387000
Alignment:
| Q |
85 |
tcgattggagcaggtatcaattttctgatctgaatccacataagattgcttcgtttgtttgtt |
147 |
Q |
| |
|
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| T |
42387062 |
tcgattggagcaggtatcaattttctgatctgaatccacataagattgcttcgtttgtttgtt |
42387000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 42387160 - 42387117
Alignment:
| Q |
26 |
gatgcatcgcagagaatgtcggtcgaagctaggctaccccattacatt |
73 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42387160 |
gatgcatcgcagagaatgtcg----aagctaggctaccccattacatt |
42387117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 84932 - 84872
Alignment:
| Q |
276 |
cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
84932 |
cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga |
84872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 590
Target Start/End: Complemental strand, 21989083 - 21988926
Alignment:
| Q |
433 |
ttttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatattagcactagctggtgtaggcnnnnnnnnnnnnntggttatggcatgtgct |
532 |
Q |
| |
|
||||||||||||| | |||| |||||| |||||||||| ||||||||| |||||||||||||| | | |||||||||||| |||| |
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| T |
21989083 |
ttttcttcatggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgct |
21988984 |
T |
|
| Q |
533 |
acttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtg |
590 |
Q |
| |
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|||||||| | | |||| |||||| ||||||||| |||||||||||||| | |||||| |
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| T |
21988983 |
acttcagcggacactacgacactaactttagttgctgttgttaatcaaactggtggtg |
21988926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 8944222 - 8944167
Alignment:
| Q |
551 |
acactagctttagttgttgttgttaatcaaattagtgg---tggctaagtcatttg |
603 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8944222 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttg |
8944167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 26887437 - 26887492
Alignment:
| Q |
551 |
acactagctttagttgttgttgttaatcaaattagtgg---tggctaagtcatttg |
603 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26887437 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttg |
26887492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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