View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15375_low_3 (Length: 643)
Name: NF15375_low_3
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15375_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 10 - 628
Target Start/End: Original strand, 30620370 - 30620990
Alignment:
| Q |
10 |
gcacagatgaacttgactgtgagccagtactcatagaaagtgatagtgtctgcacacgtgcaccactttcattgttgttattgttgttgttttctggt-- |
107 |
Q |
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| T |
30620370 |
gcacagatgaacttgactgtgagccagtactcatagaaagtgatagtgtctgcacacgtgcaccactttcattgttgttattgttgttgttttctggtgg |
30620469 |
T |
|
| Q |
108 |
-ggtggttggtttctgagccatgtttttatcatagataaacctatcgagttattgttacttgtgctaccatcaccaccgccacaggatgcttccggctga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30620470 |
tggtggttggtttctgagccatgtttttatcatagataaacctattgagttattgttacttgtactaccatcaccaccgccacaggatgcttccggctga |
30620569 |
T |
|
| Q |
207 |
tgaggtggaaggtgtaatgaagagtatgagttgctaccaccgtattcttgatggtcggtgaaagagtgtccaccgaggaagttttctagctttggttgtg |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30620570 |
tgaggtgggaggtgtaatgaagagtatgagttgctaccaccgtattcttgatggtcggtgaaagagtgtccaccgaggaagttttctagctttggttgtg |
30620669 |
T |
|
| Q |
307 |
cttgttggttgttgttgttcacattttggttcatgcatgatgttcccaatagtaggttttggttgttgtagttctccttccaatctgaaaaaatataaag |
406 |
Q |
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| T |
30620670 |
cttgttggttgttgttgttcacattttggttcatgcatgatgttcccaatagtaggttttggttgttgtagttctccttccaatctgaaaaaatataaag |
30620769 |
T |
|
| Q |
407 |
tttttagttagcaccacatctaaaaatatttgagttttggtgatgtgattctggtcggttacgaagaactcaactcatctaaacttttttaaattaatnn |
506 |
Q |
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| T |
30620770 |
tttttagttagcaccgcatctaaaaatatttgagttttggtgatgtgattctggtcagttacgaagaactcaactcatctaaacttttttaaattaat-a |
30620868 |
T |
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| Q |
507 |
nnnnnnnnnngtttcacattgattagttagaagcatcttatgttatatttctcataaagtgctaaccaaggtgaagccttatactaattttttcttgaca |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30620869 |
aaaaaaaaaagtttcacattgattagttagaagcatcttatgttatatttctcataaagtgctaaccaaggtgaagcattatactaattttttcttgaca |
30620968 |
T |
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| Q |
607 |
aaattaattagggaagagttat |
628 |
Q |
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|||||||||||||| ||||||| |
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| T |
30620969 |
aaattaattagggacgagttat |
30620990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 54689468 - 54689539
Alignment:
| Q |
242 |
accaccgtattcttgatggtcggtgaaagagtgtccaccgaggaagttttctagctttggttgtgcttgttg |
313 |
Q |
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|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
54689468 |
accaccgtattcatgatggtcggtaaaagagtatccaccgaggaagttttctagctttggttgtggttgttg |
54689539 |
T |
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