View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15375_low_5 (Length: 361)
Name: NF15375_low_5
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15375_low_5 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 3682204 - 3682545
Alignment:
| Q |
17 |
aacatatagagagaagaacttagattatgtgacaaagaaagatcttnnnnnnnnnctataaaaacttattaccgaa-ttaattataaattttaagaaata |
115 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3682204 |
aacatatagagagaagaacttagatcatgtgacaaaaaaa-atct--agaaaaaactataaaaacttattaccgaaattaattataaattttaagaaata |
3682300 |
T |
|
| Q |
116 |
atttannnnnnnaataaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacag |
215 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
3682301 |
attt-tttttttaataaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaagtgtacaaagggagaaccaccagaaagtatttacag |
3682399 |
T |
|
| Q |
216 |
agtcaaattgccactaaaaaagagcagcaacaaaaacagataaaattacacctgaatactcatacaaagagtcggatgtttccaccaatcagtaaaattg |
315 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3682400 |
agtcaaactgccactaaaaaacagcagcaacaaaaacagataaaattacacatgaacacccatacaaagagtcggatgtttccaccaatcagtaaaattg |
3682499 |
T |
|
| Q |
316 |
taacaacaagaagcttgactcgatttgagccaaaggaacatattca |
361 |
Q |
| |
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|||||| | |||||||| |||||||||||||||||||| |||||| |
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| T |
3682500 |
taacaaaaggaagcttgcttcgatttgagccaaaggaacgtattca |
3682545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 131 - 332
Target Start/End: Original strand, 2088986 - 2089190
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccact |
230 |
Q |
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||||||||||||||| ||||| |||||||| || ||| |||||| |||||||| ||| ||||||||||| | |||||||||||||||||| |||||||| |
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| T |
2088986 |
aaatcaaaatgagatatcaataaaaccacattgactcatcctgcataaggtgtgcaaaaggagaaccacctgcaagtatttacagagtcaagttgccact |
2089085 |
T |
|
| Q |
231 |
aaa-aaagagcagcaacaaaaacagata--aaattacacctgaatactcatacaaagagtcggatgtttccaccaatcagtaaaattgtaacaacaagaa |
327 |
Q |
| |
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||| ||| ||| ||| |||||||||| | ||||||||| |||| || | ||||||||||| ||||||||||||||||||||||| | |||||| | ||| |
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| T |
2089086 |
aaagaaacagcggcagcaaaaacagaaaataaattacacttgaacacccgtacaaagagtcagatgtttccaccaatcagtaaaactataacaaaaggaa |
2089185 |
T |
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| Q |
328 |
gcttg |
332 |
Q |
| |
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||||| |
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| T |
2089186 |
gcttg |
2089190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 321
Target Start/End: Original strand, 643560 - 643752
Alignment:
| Q |
128 |
aataaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgcc |
227 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| ||| ||||||||||| ||| ||||||||||||||| || | |
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| T |
643560 |
aataaatcaaaatgagatatcaataaaaccacagtggttcaacctgcacaccttgtgcaaaaggagaaccacc-gaa---atttacagagtcaaagtgtc |
643655 |
T |
|
| Q |
228 |
actaaa-aaagagcagcaacaaaaacagata--aaattacacctgaatactcatacaaagagtcggatgtttccaccaatcagtaaaattgtaacaa |
321 |
Q |
| |
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|||||| ||| ||| |||| ||||||||| | |||||||||||||| || |||||| | |||||||||| ||||||||||||||||| | |||||| |
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| T |
643656 |
actaaagaaacagcggcaaaaaaaacagaaaataaattacacctgaacacccatacacatagtcggatgtgtccaccaatcagtaaaactataacaa |
643752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 37031317 - 37031215
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccact |
230 |
Q |
| |
|
||||||||||||||| | ||| ||| || |||| ||||||||| | ||||| || ||| ||||||||||| ||||||||||||||||||| ||||||| |
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| T |
37031317 |
aaatcaaaatgagatattaataaaatcagagtggttcaacctgtataaggtatgcaaaaggagaaccaccgacaagtatttacagagtcaaagtgccact |
37031218 |
T |
|
| Q |
231 |
aaa |
233 |
Q |
| |
|
||| |
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|
| T |
37031217 |
aaa |
37031215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 42831438 - 42831336
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccact |
230 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | |||||| ||||||||||||| ||| | ||||||| |||||||||| || ||||||| ||| ||| |
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| T |
42831438 |
aaatcaaaatgagatatcaatagaaccacaatagttcaacatgcacaaggtgtgcaaaagaagaaccattggaaagtatttgcacagtcaaagtgctact |
42831339 |
T |
|
| Q |
231 |
aaa |
233 |
Q |
| |
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||| |
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|
| T |
42831338 |
aaa |
42831336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 31874204 - 31874306
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccact |
230 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||| | |||||||| ||| ||| ||| |||| ||||||||||||| ||||| | ||||||| |
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| T |
31874204 |
aaatcaaaatgagatataaattaaaccacagtgattccgcttgcacaagacgtgcaaaaatcgaaacaccggaaagtatttacacagtcagagtgccact |
31874303 |
T |
|
| Q |
231 |
aaa |
233 |
Q |
| |
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||| |
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|
| T |
31874304 |
aaa |
31874306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 28946049 - 28946097
Alignment:
| Q |
203 |
aaagtatttacagagtcaaattgccactaaaaaagagcagcaacaaaaa |
251 |
Q |
| |
|
|||||||||||||||||| | |||||||||| || |||| ||||||||| |
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|
| T |
28946049 |
aaagtatttacagagtcacagtgccactaaagaacagcatcaacaaaaa |
28946097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 3367357 - 3367251
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaac-cacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccac |
229 |
Q |
| |
|
|||| |||||||||| ||||| ||| |||| || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
3367357 |
aaattaaaatgagatatcaataaaaatcacaatggttcaacctgcacaaggtgtgcaatatgagaaccatcagaaagtatttacagagtcaaagtgccac |
3367258 |
T |
|
| Q |
230 |
taaaaaa |
236 |
Q |
| |
|
||||||| |
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|
| T |
3367257 |
taaaaaa |
3367251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 332
Target Start/End: Complemental strand, 4535374 - 4535169
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccact |
230 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| |||||| |||||||| || | ||| ||| ||||||| ||||||||||| |||||| |||||| |
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|
| T |
4535374 |
aaatcaaaatgagatatcaataaaaccacagtaattcaacttgcacaagatgcgcaaaaggataaccaccgataagtatttacatagtcaatgagccact |
4535275 |
T |
|
| Q |
231 |
aaa-aaagagcagcaac-aaaaacag--ataaaattacacctgaatactcatacaaagagtcggatgtttccaccaatcagtaaaattgtaacaacaaga |
326 |
Q |
| |
|
||| ||| | | | ||| |||||||| | ||||||||| |||| || |||||| | |||| |||| ||||||||||||||||| | |||||| |||| |
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|
| T |
4535274 |
aaagaaacaacggtaacaaaaaacagcaaataaattacacttgaacacccatacacaaagtcatatgtgtccaccaatcagtaaaactataacaaaaaga |
4535175 |
T |
|
| Q |
327 |
agcttg |
332 |
Q |
| |
|
|||||| |
|
|
| T |
4535174 |
agcttg |
4535169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 25056605 - 25056707
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtcaaattgccact |
230 |
Q |
| |
|
||||||||||||| | ||||| ||||||| ||| |||| ||||||||||| ||| ||| ||||||||| | ||||||||||||| ||||| ||||||| |
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| T |
25056605 |
aaatcaaaatgaggtatcaataaaaccacggtgattcatcctgcacaaggcgtgcaaaaggagaaccatcggaaagtatttacacagtcacggtgccact |
25056704 |
T |
|
| Q |
231 |
aaa |
233 |
Q |
| |
|
||| |
|
|
| T |
25056705 |
aaa |
25056707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 51190 - 51243
Alignment:
| Q |
258 |
aaattacacctgaatactcatacaaagagtcggatgtttccaccaatcagtaaa |
311 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
51190 |
aaattacacctgaacacccatacaaagagttggatgtttccaccaatccgtaaa |
51243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 40305609 - 40305520
Alignment:
| Q |
131 |
aaatcaaaatgagatttcaattaaaccacagtgcttcaacctgcacaaggtgtgtaaagggagaaccaccagaaagtatttacagagtca |
220 |
Q |
| |
|
||||||||||||||| | |||||||||| |||| ||||||||||| |||| | |||| ||||||||| | |||| |||||||| ||||| |
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|
| T |
40305609 |
aaatcaaaatgagatatgaattaaaccatagtgattcaacctgcataaggcggataaaaggagaaccatcggaaaatatttacacagtca |
40305520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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