View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15375_low_7 (Length: 316)

Name: NF15375_low_7
Description: NF15375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15375_low_7
NF15375_low_7
[»] chr5 (8 HSPs)
chr5 (1-241)||(31760321-31760561)
chr5 (55-198)||(31750208-31750352)
chr5 (55-146)||(31767141-31767232)
chr5 (1-133)||(31752818-31752949)
chr5 (241-274)||(22098254-22098287)
chr5 (237-274)||(32873188-32873225)
chr5 (241-274)||(36416101-36416134)
chr5 (242-274)||(4088443-4088475)
[»] chr8 (9 HSPs)
chr8 (236-274)||(25830285-25830323)
chr8 (242-274)||(41639827-41639859)
chr8 (242-274)||(42620016-42620048)
chr8 (240-274)||(31806297-31806331)
chr8 (239-268)||(11114714-11114743)
chr8 (237-270)||(22767127-22767160)
chr8 (242-274)||(67200-67232)
chr8 (242-274)||(13970919-13970951)
chr8 (242-274)||(40719682-40719714)
[»] chr7 (5 HSPs)
chr7 (232-274)||(33212032-33212074)
chr7 (242-274)||(35823014-35823046)
chr7 (238-268)||(25614866-25614896)
chr7 (240-274)||(40854694-40854728)
chr7 (242-274)||(6822561-6822593)
[»] chr4 (12 HSPs)
chr4 (235-268)||(54622529-54622562)
chr4 (239-274)||(3968882-3968917)
chr4 (234-268)||(51887655-51887689)
chr4 (239-268)||(24772668-24772697)
chr4 (241-274)||(29407065-29407098)
chr4 (241-274)||(33776852-33776885)
chr4 (242-274)||(1562575-1562607)
chr4 (238-274)||(25725733-25725769)
chr4 (242-274)||(32696828-32696860)
chr4 (236-268)||(36364834-36364866)
chr4 (242-274)||(37514171-37514203)
chr4 (242-274)||(40755921-40755953)
[»] chr3 (11 HSPs)
chr3 (241-274)||(52714732-52714765)
chr3 (237-268)||(2482719-2482750)
chr3 (239-274)||(48352993-48353028)
chr3 (243-273)||(36756091-36756121)
chr3 (240-274)||(48944749-48944783)
chr3 (237-274)||(29573395-29573432)
chr3 (242-274)||(11335341-11335373)
chr3 (242-274)||(37894282-37894314)
chr3 (242-274)||(49761225-49761257)
chr3 (242-274)||(51032663-51032695)
chr3 (242-274)||(54099396-54099428)
[»] chr2 (6 HSPs)
chr2 (234-268)||(9947729-9947763)
chr2 (235-268)||(44712034-44712067)
chr2 (245-274)||(45259324-45259353)
chr2 (242-274)||(6336252-6336284)
chr2 (242-274)||(11980651-11980683)
chr2 (242-274)||(31635849-31635881)
[»] chr1 (8 HSPs)
chr1 (231-268)||(12990514-12990551)
chr1 (241-274)||(34768099-34768132)
chr1 (241-274)||(49569995-49570028)
chr1 (242-274)||(12999861-12999893)
chr1 (242-274)||(18541090-18541122)
chr1 (242-274)||(33076119-33076151)
chr1 (240-268)||(46947979-46948007)
chr1 (242-274)||(51193170-51193202)
[»] chr6 (2 HSPs)
chr6 (240-272)||(27102113-27102145)
chr6 (240-272)||(27143935-27143967)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31760561 - 31760321
Alignment:
Q  1 ggataatgattgattaattgtttaatatgaagttgagggaannnnnnnatattttctataaattatcaaaatatgttgattgttgagaataagaattcta 100  Q
    |||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31760561 ggataatgattgattaattgtttaatataaagttgagggaatttttttatattttctataaattatcaaaatatgttgattgttgagaataagaattcta 31760462  T
Q  101 ggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtgagatttattattatgtttcatttcaaaagtattaagttttatttgtgtgactatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31760461 ggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtgagatttattattatgtttcatttcaaaagtattaagttttatttgtgtgactatt 31760362  T
Q  201 tggattgtgattattgctaaatgtttatacgtattaaaatt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31760361 tggattgtgattattgctaaatgtttatacgtattaaaatt 31760321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 55 - 198
Target Start/End: Original strand, 31750208 - 31750352
Alignment:
Q  55 tctataaattatcaaaatatgttgattgttgagaataagaattctaggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtgagattta-- 152  Q
    ||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||| |||||      
T  31750208 tctataaattattcaattattttgattgttgagaataagaattctaggttcaaaacagaaccatgaattgttaaggagtctgttaaacgtgatatttaat 31750307  T
Q  153 ttattatgtttcatttcaaaagtattaagttttatttgtgtgacta 198  Q
    ||||| | ||||||||||| ||| |||| |||||| ||||||||||    
T  31750308 ttattgt-tttcatttcaagagtcttaaattttatctgtgtgacta 31750352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 31767232 - 31767141
Alignment:
Q  55 tctataaattatcaaaatatgttgattgttgagaataagaattctaggttcaaaacagaatcttgaattgtcaaggagtctgttaaatgtga 146  Q
    ||||||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| ||||    
T  31767232 tctataaattattcaaatattttgattgttgagaataataattctaggttcaaaacagaaccatgaattgttaaggagtctgttaaacgtga 31767141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 31752949 - 31752818
Alignment:
Q  1 ggataatgattgattaattgtttaatatgaagttgagggaannnnnnnatattttctataaattatcaaaatatgttgattgttgagaataagaattcta 100  Q
    |||||| |||||||| |||||||||||| |||||| || ||       |||||||| |||| ||||||||||||||||| |||||||||||||||| |||    
T  31752949 ggataaagattgatttattgtttaatataaagttgtggtaatgtttt-atattttcgataacttatcaaaatatgttgaatgttgagaataagaatacta 31752851  T
Q  101 ggttcaaaacagaatcttgaattgtcaaggagt 133  Q
    | |||||||||| | ||||||| ||||||||||    
T  31752850 gattcaaaacaggaccttgaatagtcaaggagt 31752818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 22098254 - 22098287
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||| |||||||||||||    
T  22098254 tgagaaatgatatttgtacaaccattttctaaca 22098287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 32873225 - 32873188
Alignment:
Q  237 aaattgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  32873225 aaattgagaaatgatatttgtacaaccaatttctaaca 32873188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 36416134 - 36416101
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||| |||||||||||||    
T  36416134 tgagaaatgatatttgtacaaccattttctaaca 36416101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 4088443 - 4088475
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||||| |||||    
T  4088443 gagaaatgatatttgtacatccattttataaca 4088475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 25830323 - 25830285
Alignment:
Q  236 aaaattgagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25830323 aaaattgagaaatgatatttgtacaaccattttctaaca 25830285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 41639859 - 41639827
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||||||||||||    
T  41639859 gagaaatgatatttgtacatccattttctaaca 41639827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 42620048 - 42620016
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||||||||||||    
T  42620048 gagaaatgatatttgtacatccattttctaaca 42620016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 31806297 - 31806331
Alignment:
Q  240 ttgagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||| |||||||||||||    
T  31806297 ttgagaaatgatatttgtacaaccattttctaaca 31806331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 11114743 - 11114714
Alignment:
Q  239 attgagaaatgatatttgtacatccatttt 268  Q
    ||||||||||||||||||||||||||||||    
T  11114743 attgagaaatgatatttgtacatccatttt 11114714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 22767127 - 22767160
Alignment:
Q  237 aaattgagaaatgatatttgtacatccattttct 270  Q
    |||||||||||||||||||||||| |||||||||    
T  22767127 aaattgagaaatgatatttgtacaaccattttct 22767160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 67232 - 67200
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  67232 gagaaatgatatttgtacaaccattttctaaca 67200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 13970919 - 13970951
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||||| ||||||    
T  13970919 gagaaatgatatttgtacatccatttcctaaca 13970951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 40719714 - 40719682
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  40719714 gagaaatgatatttgtacaaccattttctaaca 40719682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 33212032 - 33212074
Alignment:
Q  232 tattaaaattgagaaatgatatttgtacatccattttctaaca 274  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  33212032 tatttaaattgagaaatgatatttgtacaaccattttctaaca 33212074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 35823046 - 35823014
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||||||||||||    
T  35823046 gagaaatgatatttgtacatccattttctaaca 35823014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 25614896 - 25614866
Alignment:
Q  238 aattgagaaatgatatttgtacatccatttt 268  Q
    |||||||||||||||||||||||||||||||    
T  25614896 aattgagaaatgatatttgtacatccatttt 25614866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 40854728 - 40854694
Alignment:
Q  240 ttgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||| ||||||||||||||||||||    
T  40854728 ttgagaaatgatatctgtacatccattttctaaca 40854694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 6822593 - 6822561
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  6822593 gagaaatgatatttgtacaaccattttctaaca 6822561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 54622529 - 54622562
Alignment:
Q  235 taaaattgagaaatgatatttgtacatccatttt 268  Q
    ||||||||||||||||||||||||||||||||||    
T  54622529 taaaattgagaaatgatatttgtacatccatttt 54622562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 3968882 - 3968917
Alignment:
Q  239 attgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||| |||||||||||||    
T  3968882 attgagaaatgatatttgtacaaccattttctaaca 3968917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 51887655 - 51887689
Alignment:
Q  234 ttaaaattgagaaatgatatttgtacatccatttt 268  Q
    ||||||||||||||||||||||| |||||||||||    
T  51887655 ttaaaattgagaaatgatatttgaacatccatttt 51887689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 24772668 - 24772697
Alignment:
Q  239 attgagaaatgatatttgtacatccatttt 268  Q
    ||||||||||||||||||||||||||||||    
T  24772668 attgagaaatgatatttgtacatccatttt 24772697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 29407098 - 29407065
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||| |||||||||||||    
T  29407098 tgagaaatgatatttgtacaaccattttctaaca 29407065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 33776885 - 33776852
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||| |||||||||||||    
T  33776885 tgagaaatgatatttgtacaaccattttctaaca 33776852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 1562607 - 1562575
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  1562607 gagaaatgatatttgtacaaccattttctaaca 1562575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 25725769 - 25725733
Alignment:
Q  238 aattgagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  25725769 aattgagaaatgatatttgtacaaccactttctaaca 25725733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 32696860 - 32696828
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  32696860 gagaaatgatatttgtacaaccattttctaaca 32696828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 36364866 - 36364834
Alignment:
Q  236 aaaattgagaaatgatatttgtacatccatttt 268  Q
    |||| ||||||||||||||||||||||||||||    
T  36364866 aaaaatgagaaatgatatttgtacatccatttt 36364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 37514203 - 37514171
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||||| |||||    
T  37514203 gagaaatgatatttgtacatccattttgtaaca 37514171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 40755921 - 40755953
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  40755921 gagaaatgatatttgtacaaccattttctaaca 40755953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 52714732 - 52714765
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||||||||||||    
T  52714732 tgagaaatgatatttgtacatccattttctaaca 52714765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 2482750 - 2482719
Alignment:
Q  237 aaattgagaaatgatatttgtacatccatttt 268  Q
    ||||||||||||||||||||||||||||||||    
T  2482750 aaattgagaaatgatatttgtacatccatttt 2482719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 48352993 - 48353028
Alignment:
Q  239 attgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||||||||| |||||    
T  48352993 attgagaaatgatatttgtacatccattttttaaca 48353028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 36756121 - 36756091
Alignment:
Q  243 agaaatgatatttgtacatccattttctaac 273  Q
    |||||||||||||||||||||||||||||||    
T  36756121 agaaatgatatttgtacatccattttctaac 36756091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 48944783 - 48944749
Alignment:
Q  240 ttgagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||| |||||||||||||    
T  48944783 ttgagaaatgatatttgtacaaccattttctaaca 48944749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 29573432 - 29573395
Alignment:
Q  237 aaattgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  29573432 aaattgagaaatgatatttgtacaaccattttgtaaca 29573395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 11335373 - 11335341
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  11335373 gagaaatgatatttgtacaaccattttctaaca 11335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 37894314 - 37894282
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  37894314 gagaaatgatatttgtacaaccattttctaaca 37894282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 49761257 - 49761225
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  49761257 gagaaatgatatttgtacaaccattttctaaca 49761225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 51032695 - 51032663
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  51032695 gagaaatgatatttgtacaaccattttctaaca 51032663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 54099428 - 54099396
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||| |||||||||||||||||||||||||    
T  54099428 gagaaataatatttgtacatccattttctaaca 54099396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 9947729 - 9947763
Alignment:
Q  234 ttaaaattgagaaatgatatttgtacatccatttt 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  9947729 ttaaaattgagaaatgatatttatacatccatttt 9947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 44712067 - 44712034
Alignment:
Q  235 taaaattgagaaatgatatttgtacatccatttt 268  Q
    |||||||||||||||||||||| |||||||||||    
T  44712067 taaaattgagaaatgatatttgaacatccatttt 44712034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 45259353 - 45259324
Alignment:
Q  245 aaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||||||||    
T  45259353 aaatgatatttgtacatccattttctaaca 45259324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 6336252 - 6336284
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  6336252 gagaaatgatatttgtacaaccattttctaaca 6336284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 11980651 - 11980683
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  11980651 gagaaatgatatttgtacaaccattttctaaca 11980683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 31635881 - 31635849
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  31635881 gagaaatgatatttgtacaaccattttctaaca 31635849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 12990551 - 12990514
Alignment:
Q  231 gtattaaaattgagaaatgatatttgtacatccatttt 268  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  12990551 gtattaaaaatgagaaatgatatttgtacaaccatttt 12990514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 34768099 - 34768132
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    |||||||||||||||||||||||||||| |||||    
T  34768099 tgagaaatgatatttgtacatccattttataaca 34768132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 49569995 - 49570028
Alignment:
Q  241 tgagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||||| ||||||    
T  49569995 tgagaaatgatatttgtacatccatttcctaaca 49570028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 12999893 - 12999861
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  12999893 gagaaatgatatttgtacaaccattttctaaca 12999861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 18541122 - 18541090
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  18541122 gagaaatgatatttgtacaaccattttctaaca 18541090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 33076119 - 33076151
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||| |||||||||||||    
T  33076119 gagaaatgatatttgtacaaccattttctaaca 33076151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 46947979 - 46948007
Alignment:
Q  240 ttgagaaatgatatttgtacatccatttt 268  Q
    |||||||||||||||||||||||||||||    
T  46947979 ttgagaaatgatatttgtacatccatttt 46948007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 51193202 - 51193170
Alignment:
Q  242 gagaaatgatatttgtacatccattttctaaca 274  Q
    ||||||||||||||||||||||||||| |||||    
T  51193202 gagaaatgatatttgtacatccattttataaca 51193170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 27102113 - 27102145
Alignment:
Q  240 ttgagaaatgatatttgtacatccattttctaa 272  Q
    ||||||||||||||||||||| |||||||||||    
T  27102113 ttgagaaatgatatttgtacaaccattttctaa 27102145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 27143935 - 27143967
Alignment:
Q  240 ttgagaaatgatatttgtacatccattttctaa 272  Q
    ||||||||||||||||||||| |||||||||||    
T  27143935 ttgagaaatgatatttgtacaaccattttctaa 27143967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University