View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15376_high_1 (Length: 878)
Name: NF15376_high_1
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 34142208 - 34141715
Alignment:
| Q |
1 |
gagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34142208 |
gagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattgtgagcacagagaaggaaaggttttctattcc |
34142109 |
T |
|
| Q |
101 |
cttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaatggggaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34142108 |
cttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaaacccttcaaaatataggccatataaatggggaaag |
34142009 |
T |
|
| Q |
201 |
tttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctaccctagagctagacagtttaacaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142008 |
tttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctaccctagagctagacagtttaacaaa |
34141909 |
T |
|
| Q |
301 |
ataatggtcatgcaaacatgtgttcttagtgcatatgttaaggaattcaatgtgaaagatttatcgtagaaattgtgcattcaatatttaaacgtttaaa |
400 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34141908 |
ataatggtca----------tgtttttagtgcatatgttaaggaattaaatgtgaaagatttatcttagaaattgtgcattcaatatttaaacgtttaaa |
34141819 |
T |
|
| Q |
401 |
aacaaattatacttttaatttcattcacatgtggcttaaaaacacatattaacatttttctnnnnnnnnntcacttagcccatgcttgtacgcaatcaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
34141818 |
aacaaattatacttttaatttcattcacatgtggcttaaaaacacatattaacatttctctaaaaaaaaatcacttagcccatgtttgtacgcaatcaaa |
34141719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 34136576 - 34136301
Alignment:
| Q |
1 |
gagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcc |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| || ||| || ||||| || |||||||||||||| |
|
|
| T |
34136576 |
gagacttgggtttattgttgcaggtttggagtaatgatgcctatgagagtgtggagcatagagtaatggtgaacaaggagaaagagaggttttctattcc |
34136477 |
T |
|
| Q |
101 |
cttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaatggggaaag |
200 |
Q |
| |
|
||||| || |||||| |||| |||||| |||| ||||| || ||||||| |||| |||||| || ||||||||| ||||||||||||||| ||| |
|
|
| T |
34136476 |
attcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaag |
34136377 |
T |
|
| Q |
201 |
tttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctac |
276 |
Q |
| |
|
||| |||| |||||| | |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34136376 |
ttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttcaaatttatcattataagctac |
34136301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 34139528 - 34139259
Alignment:
| Q |
1 |
gagaattgggtttattgttgtaggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcc |
100 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||| | ||| || ||||| ||||| ||||||||||| |
|
|
| T |
34139528 |
gagacttgagtttattgttacaggtttggagtaatgatgccaatgagagtgtggagcacagagcattggtgaacaaggagaaagaaagattttctattcc |
34139429 |
T |
|
| Q |
101 |
cttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaatggggaaag |
200 |
Q |
| |
|
|||||||| |||||||||||| |||| |||| ||||| || |||||||| || ||||||| ||||||||||||| ||| ||||||||||| || |
|
|
| T |
34139428 |
attctttttcaacccaggatatgatattgaaatcaagcctttggaggagcttattaacgagcaaaacccttcaaaatataagccttataaatggggtaaa |
34139329 |
T |
|
| Q |
201 |
tttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattata |
270 |
Q |
| |
|
||| ||| || |||| | |||| || ||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
34139328 |
ttttatgtccatagaacaaacagtaacttcaagaaacaagaagaggagaatcttcaaatttatcattata |
34139259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 34130869 - 34130619
Alignment:
| Q |
22 |
aggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcccttctttttattcccaggata |
121 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||| ||| | | | | ||||| ||||||||||| || ||||||||||| ||||| | | | |
|
|
| T |
34130869 |
aggtttggagcaatgatgcttatgaaagtgtggaacacagagtgatggttaactctgagaaagaaaggttttcaatccccttctttttcttccctgcaca |
34130770 |
T |
|
| Q |
122 |
tgacgctgaagtcaaaccttttgaagagcttataaatgagcaaattccttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagac |
221 |
Q |
| |
|
||| ||| |||||||||| | || ||||| | ||||||| ||| ||| ||||||| || ||||| || ||||||||||||||||| ||||||| |
|
|
| T |
34130769 |
cgacactgtagtcaaacctctcgaggagctgacaaatgaggaaaaccctccaaaatacagaccatacaattggggaaagtttcttgtcaacagaaagagt |
34130670 |
T |
|
| Q |
222 |
agcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataag |
272 |
Q |
| |
|
|||||| || |||| || | |||||||| |||||||||||||||||||| |
|
|
| T |
34130669 |
agcaatttcgagaagaaaaaggtggagaacattcaaatttatcattataag |
34130619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 34119540 - 34119455
Alignment:
| Q |
22 |
aggtttggagcaatgatgcctatgagagtgtggagcacagagcgattctgagcacagagaaggaaaggttttctattcccttcttt |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| | || ||| | | |||||||| |||||||| ||||| |||||| |
|
|
| T |
34119540 |
aggtttggagcaatgatgcttatgagagtgtagagcacagggtaatggtgaactctgagaaggataggttttccattccgttcttt |
34119455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University