View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15376_high_13 (Length: 417)
Name: NF15376_high_13
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 51854977 - 51855373
Alignment:
| Q |
1 |
gtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854977 |
gtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgc |
51855076 |
T |
|
| Q |
101 |
tgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855077 |
tgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatct |
51855176 |
T |
|
| Q |
201 |
cgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855177 |
cgtaccagaagcctaccttccagaaatctactttgaaagtttgatatcacatttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatc |
51855276 |
T |
|
| Q |
301 |
ttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgagaaactgctacgt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855277 |
ttgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgagaaactgctacgt |
51855373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 51858636 - 51859022
Alignment:
| Q |
1 |
gtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || | ||| |
|
|
| T |
51858636 |
gtagaatcttggactaaattgttaagtgttcctcaaatgggaggttgtggttgttatatctataccaaagtattatatatatctgaagatggcctaatgc |
51858735 |
T |
|
| Q |
101 |
tgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatct |
200 |
Q |
| |
|
||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51858736 |
tgatatattttttcaagagagggaaatttaggttggctgtctatgattccattaatgatacattgaagattcctgaaattcaaaacaatatccatgatct |
51858835 |
T |
|
| Q |
201 |
cgtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatc |
300 |
Q |
| |
|
||| ||||| ||||||||||||| ||||| || ||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51858836 |
ggtaaaagaagtctaccttccagaagtctacattgaaactttgatatcacctctttctcagtattaagatgtagatgttgtgctatgtgaacttatgatc |
51858935 |
T |
|
| Q |
301 |
ttgttatttattttatgctggttctggtt---accaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttga |
384 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||| ||| |||| |||||||||||||||||||| |||||| |||||| |
|
|
| T |
51858936 |
ttgttatttattttatgcttgttctggttaccaccaatgactttacgagttattgttgatttatggtgtatggtatatgcagcttga |
51859022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 394
Target Start/End: Complemental strand, 51756767 - 51756381
Alignment:
| Q |
5 |
aatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgctgac |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
51756767 |
aatcttggactaaattgttaagtgttcctcaaatgggaga------tcattatatctataccaaaccattatatatttctgaggatgaccaagtgctgat |
51756674 |
T |
|
| Q |
105 |
gtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatctcgt- |
203 |
Q |
| |
|
||||||| | |||| ||| || |||||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||| || |||||||| | |
|
|
| T |
51756673 |
gtattttgtgaagaggggaaaatttagtttggctttctatgattccataaatgatacttttaagattcctgaagcccaaaacaacattcatgatctgatg |
51756574 |
T |
|
| Q |
204 |
--accagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatct |
301 |
Q |
| |
|
||| |||| | | |||||||| || || || | ||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||| ||| |
|
|
| T |
51756573 |
atacctgaagtttgcattccagaagtccactttgagagtttgatatcacctttatctcagtattaggatttagatgttgtgcaatgtgaacttatggtct |
51756474 |
T |
|
| Q |
302 |
tgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgagaaactgcta |
394 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||||| |||| ||||||| ||| | |||||| ||||||||||| ||||| |
|
|
| T |
51756473 |
tgttatttgatttatgctttttctggttaccaatgacattacgggttattgttaatttatgatgtgagaaatatgaggcttgagaaattgcta |
51756381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 51762949 - 51762605
Alignment:
| Q |
5 |
aatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgctgac |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||| |||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51762949 |
aatcttggactaaattgttaagtgttcctcaaataggagatcgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgat |
51762850 |
T |
|
| Q |
105 |
gtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatc---tc |
201 |
Q |
| |
|
|||| || | ||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||| |||||||||||| || ||||||| | |
|
|
| T |
51762849 |
gtatattctgaagatggggaaatttagtttggttgtctatggttccataaatgatacttttaagattcctaaaattcaaaacaacattcatgatccgttg |
51762750 |
T |
|
| Q |
202 |
gtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatct |
301 |
Q |
| |
|
||||| | || | ||| ||| |||||||| | ||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
51762749 |
ataccattattctgcattctggaagtctacgttgagagtttgatatcacctttttttcaatattaggatgtagatgctgtgctatg--------tgatct |
51762658 |
T |
|
| Q |
302 |
tgttatttattttatgctggttctggttaccaatgacttcacgggttactgtt |
354 |
Q |
| |
|
||||||||| | ||||| |||||||| |||||||||| |||||||| |||| |
|
|
| T |
51762657 |
tgttatttaatacatgctttttctggtttccaatgactttacgggttattgtt |
51762605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 51381403 - 51381291
Alignment:
| Q |
74 |
tatatatatctgaagatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcc |
173 |
Q |
| |
|
||||||| || |||||||||||||| ||| | | ||| | ||||||||||| || |||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
51381403 |
tatatatttcggaagatgaccaagttttgatgcagtttctaaagatggggaaattcagtttgcttgtctatgattccaaaaatgatactttgaagattcc |
51381304 |
T |
|
| Q |
174 |
tgcaattcaaaac |
186 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
51381303 |
tgaaattcaaaac |
51381291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 51377966 - 51377913
Alignment:
| Q |
226 |
atctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgtt |
279 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
51377966 |
atctacgttgagagtttgatctcacctttttctcaatattaggatgtagatgtt |
51377913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 386
Target Start/End: Complemental strand, 4183018 - 4182635
Alignment:
| Q |
5 |
aatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgctgac |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4183018 |
aatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgat |
4182919 |
T |
|
| Q |
105 |
gtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatc---tc |
201 |
Q |
| |
|
||||||| | |||| | |||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| | || | |
|
|
| T |
4182918 |
gtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttataagattcctgaaattcaaggcaacatccaagttccgatg |
4182819 |
T |
|
| Q |
202 |
gtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatct |
301 |
Q |
| |
|
| | | | ||| ||||| | ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
4182818 |
gaaggaagattctattttccatacgtctacattgagagtttgatatcacctttttttcaggattaggatgtagatgttgtgctatgtgaaactatgaact |
4182719 |
T |
|
| Q |
302 |
tgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgaga |
386 |
Q |
| |
|
||||||||| ||||| || |||||||||| |||||| || ||| |||| |||| | ||||||| | ||||||||||||||||||| |
|
|
| T |
4182718 |
tgttattta-tttatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgaga |
4182635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 386
Target Start/End: Complemental strand, 4743862 - 4743479
Alignment:
| Q |
5 |
aatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatatatctgaagatgaccaagtgctgac |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4743862 |
aatcttggactaaattgttaagtgttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgat |
4743763 |
T |
|
| Q |
105 |
gtattttttcaagatggggaagtttagtttggctgtctatgattccatccatgatactttgaagattcctgcaattcaaaacaatatccatgatc---tc |
201 |
Q |
| |
|
||||||| | |||| | |||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| | || | |
|
|
| T |
4743762 |
gtattttatgaagaggaggaaatttagtttggctgtctatgattccataaatgatacttataagattcctgaaattcaaggcaacatccaagttccgatg |
4743663 |
T |
|
| Q |
202 |
gtaccagaagcctaccttccagaaatctacgttaaaagtttgatatcacctttttctcaggattaggatgtagatgttgtgctatgtgaacttatgatct |
301 |
Q |
| |
|
| | | | ||| ||||| | ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
4743662 |
gaaggaagattctattttccatacgtctacattgagagtttgatatcacctttttttcaggattaggatgtagatgttgtgctatgtgaaactatgaact |
4743563 |
T |
|
| Q |
302 |
tgttatttattttatgctggttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgaga |
386 |
Q |
| |
|
||||||||| ||||| || |||||||||| |||||| || ||| |||| |||| | ||||||| | ||||||||||||||||||| |
|
|
| T |
4743562 |
tgttattta-tttatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgaga |
4743479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 27755976 - 27756025
Alignment:
| Q |
227 |
tctacgttaaaagtttgatatcacctttttctcaggattaggatgtagat |
276 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27755976 |
tctacattaaaagtttgatatcaccttgttctcgtcattaggatgtagat |
27756025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University